Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B20
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24) 92 4e-19
SB_37881| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_14730| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_3345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 29 4.4
SB_24333| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_50593| Best HMM Match : KIX (HMM E-Value=8) 28 5.8
SB_40390| Best HMM Match : BON (HMM E-Value=0.68) 28 7.7
>SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24)
Length = 201
Score = 91.9 bits (218), Expect = 4e-19
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +2
Query: 383 GALYPRATETXDLXTLHGIWSFR-PSPADPEFGYXNGWYAQDLEKTGSVIHMPVPSSYND 559
G L+PR +E+ ++ L G+W+FR + D E G+ W+++ LEK+G VI MPVP+SYND
Sbjct: 64 GMLFPRESESREIKDLSGLWNFRVDNSKDKEAGFAESWFSRPLEKSGEVIPMPVPASYND 123
Query: 560 VGEDASLRDHVXLVWYDRRFHVPPWWQTAKQR 655
+ +D +RD WYD + +VP W + R
Sbjct: 124 ITQDKGIRDFRGWAWYDMQTYVPSRWNDSNTR 155
>SB_37881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 383 GALYPRATETXDLXTLHGIWSFR-PSPADPEFGYXNGWYAQDLEK 514
G L+PR +E+ +L L+G+W+FR S + G+ WY++ LEK
Sbjct: 28 GMLFPRESESRELKDLNGLWNFRVDSSKTRDAGFQEKWYSKPLEK 72
>SB_14730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 383 GALYPRATETXDLXTLHGIWSFRPSPADPEF-GYXNGWYAQDL 508
G L+PRA+E+ ++ +L GIW FR + G+ + W+A L
Sbjct: 19 GMLFPRASESREIKSLDGIWDFRADDSPQRSKGFDDMWFANPL 61
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -1
Query: 599 PSXHGPEERRLRPRHYMKKAQACVSQSLSFQDLAHTSHXYSRILGRQAMAENSI 438
P HGP RR RPRH + A ++S+S DL Y++ R+++ NS+
Sbjct: 84 PRFHGPSTRRWRPRHRLTIANYPYTRSVSCVDLP----IYAKWSRRRSITSNSL 133
>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -1
Query: 641 SATTAERGTSCRTTPSXHGPEERRLRPRHYMKKAQACVSQSLSFQDLAHTSHXYSRILGR 462
S T + G C TP G R RP ++K + + LS + L HTS +G
Sbjct: 503 SPTFRKAGGVCTWTPGVVGQLHREKRPVRSLRKMASEDNTCLSSRMLCHTSRIQCYKVGS 562
Query: 461 QAMAENS-ISHVG 426
S ++HVG
Sbjct: 563 SVTHVGSGVTHVG 575
>SB_3345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 91 QDLVGNCFILFCALNFFLVFGIVKKTNKYRG*LDSNSKIEIQLILTSEESFIKHD 255
Q + C I NF+L K KYR +D N + + I S+E ++H+
Sbjct: 40 QGVKQGCMISPTLFNFYLSDLPEKLNEKYRNDIDLNEYLRLASIRVSDEKDLEHE 94
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 497 AQDLEKTGSVIHMPVPSSYNDVGEDASLRDHVXLVWYDRRFHVPPWWQTA 646
A D EKT +V +PVPS+ +D LR + Y RRF VP + Q A
Sbjct: 883 ATDPEKTKAVSALPVPSTVHD------LRSFLGFASYYRRF-VPKFAQVA 925
>SB_24333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -3
Query: 621 WNLLSYHTKXTWSRREASSPTSLYEE----GTGMCITEPVFSRS 502
W+L Y WS + ++ SLY+ TG C+ EP++ RS
Sbjct: 192 WSL--YDRATLWSLYDRTTLWSLYDRTTLWSTGRCMVEPLYGRS 233
>SB_50593| Best HMM Match : KIX (HMM E-Value=8)
Length = 139
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 109 CFILFCALNFFLVFGIVKKTNKYRG*LDSNSKIEIQLILTSEESFIKHD 255
C I NF+L K KYR +D N + + I S+E ++H+
Sbjct: 80 CMISPTLFNFYLSDLPEKLNEKYRNDIDLNEYLRLASIRVSDEKDLEHE 128
>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
Length = 561
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 590 HGPEERRLRPRHYMKKAQACVSQSLSFQDLAHTSHXYSR 474
HGP+E +L R +K+ A +Q L H Y R
Sbjct: 505 HGPDEMKLNMRQVLKEYWARWGAWYKYQPLDHIRQAYER 543
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,436,711
Number of Sequences: 59808
Number of extensions: 414567
Number of successful extensions: 1225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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