Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B18
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)             240   8e-64
SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)                     30   1.9  
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)                     28   5.8  
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score =  240 bits (587), Expect = 8e-64
 Identities = 120/161 (74%), Positives = 135/161 (83%)
 Frame = +3

Query: 171  IKMGIKFLEVIKPFCSILPEIAKPERKIQFRXKVLWTAITLFIFLVCCQIPLFGIMSSDS 350
            +KMGIKFLEV++PF S+LPE+AKPERKI                      PLFGIMSSDS
Sbjct: 724  LKMGIKFLEVLRPFISVLPEVAKPERKI----------------------PLFGIMSSDS 761

Query: 351  ADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAXKL 530
            ADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAG+KIIEVGDTPKDRALFNGA KL
Sbjct: 762  ADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGSKIIEVGDTPKDRALFNGAQKL 821

Query: 531  FGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAG 653
            FG++IT+GQA+VYVMTGMYG+PS++G G+CLLIIIQLF AG
Sbjct: 822  FGIIITIGQAVVYVMTGMYGDPSDLGPGICLLIIIQLFCAG 862


>SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)
          Length = 878

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 620 AHSGTNFTGFTIHSSHYINNSLTNSNH 540
           A++G+NFT   +HS++Y   + T SN+
Sbjct: 525 AYTGSNFTMTALHSAYYTMTAYTGSNY 551


>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
          Length = 685

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 388 DARITRIQ*KGSALSDDIIPNKGIWQHT 305
           +++I  I    SALS+ IIPN+ I +HT
Sbjct: 341 ESKINSIAKSSSALSNSIIPNRYILRHT 368


>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 527 IIWYGDYCWSGYCLCND 577
           +I YG+ CW+ +C C D
Sbjct: 246 LITYGECCWTLFCFCMD 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,633,224
Number of Sequences: 59808
Number of extensions: 386130
Number of successful extensions: 1112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)