Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B18
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34250.1 68415.m04190 protein transport protein sec61, putati...   211   3e-55
At1g78720.1 68414.m09175 protein transport protein sec61, putati...   210   6e-55
At1g29310.1 68414.m03583 protein transport protein sec61, putati...   206   1e-53
At3g27680.1 68416.m03456 self-incompatibility protein-related co...    28   4.7  
At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) i...    27   8.2  
At1g57990.1 68414.m06572 purine permease-related low similarity ...    27   8.2  

>At2g34250.1 68415.m04190 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score =  211 bits (516), Expect = 3e-55
 Identities = 96/159 (60%), Positives = 128/159 (80%), Gaps = 1/159 (0%)
 Frame = +3

Query: 180 GIKFLEVIKPFCSILPEIAKPERKIQFRXKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 359
           G + L +++PF + LPE+   +RK+ FR KV++T I+LFIFLVC Q+PL+GI S+  ADP
Sbjct: 4   GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63

Query: 360 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAXKLFG 536
           FYW+RVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGA KL G
Sbjct: 64  FYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLG 123

Query: 537 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAG 653
           ++I +G+A+ YV++GMYG   ++G G  +LII+QLF AG
Sbjct: 124 ILIAIGEAVAYVLSGMYGPVGQLGVGNAILIILQLFFAG 162


>At1g78720.1 68414.m09175 protein transport protein sec61, putative
           similar to SP|P38377 Protein transport protein Sec61
           alpha subunit isoform 1 (Sec61 alpha- 1) {Canis
           familiaris}; contains Pfam profile PF00344: eubacterial
           secY protein
          Length = 475

 Score =  210 bits (513), Expect = 6e-55
 Identities = 96/158 (60%), Positives = 127/158 (80%), Gaps = 1/158 (0%)
 Frame = +3

Query: 180 GIKFLEVIKPFCSILPEIAKPERKIQFRXKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 359
           G + + +++PF + LPE+  PERKI FR KV++T I+LFIFLVC Q+PL+GI S+  ADP
Sbjct: 4   GFRVIHLVRPFLAFLPEVQSPERKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63

Query: 360 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAXKLFG 536
           FYW+RVILAS+RGT+MELGI+PIVTSG++MQLLAG+KIIE+  +  +DRAL NGA KL G
Sbjct: 64  FYWMRVILASSRGTVMELGITPIVTSGMVMQLLAGSKIIEIDNNVREDRALLNGAQKLLG 123

Query: 537 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVA 650
           ++I VGQA+ YV++GMYG   E+G G  +LII+QL  A
Sbjct: 124 ILIAVGQAVAYVLSGMYGSVGELGVGNAILIIVQLCFA 161


>At1g29310.1 68414.m03583 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score =  206 bits (503), Expect = 1e-53
 Identities = 95/159 (59%), Positives = 126/159 (79%), Gaps = 1/159 (0%)
 Frame = +3

Query: 180 GIKFLEVIKPFCSILPEIAKPERKIQFRXKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 359
           G + L +++PF + LPE+   +RKI FR KV++T I+LFIFLVC Q+PL+GI S+  ADP
Sbjct: 4   GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63

Query: 360 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAXKLFG 536
           FYW+RVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGA KL  
Sbjct: 64  FYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLW 123

Query: 537 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAG 653
           ++  +G+A+ YV++GMYG   ++G G  +LII+QLF AG
Sbjct: 124 ILSAIGEAVAYVLSGMYGPVGQLGVGNAILIILQLFFAG 162


>At3g27680.1 68416.m03456 self-incompatibility protein-related
           contains similarity to S3 self-incompatibility protein
           [Papaver rhoeas] GI:1107841
          Length = 134

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 572 YINNSLTNSNHHTK*FXCTIKQSPVFRSVTNFNDF 468
           Y+N+   N    T+ F CT+KQ P +R   NF  F
Sbjct: 58  YVNSFRANIWGTTR-FMCTLKQRPNYRHYQNFTAF 91


>At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3)
           identical to CTD phosphatase-like 3 (CPL3) [Arabidopsis
           thaliana] GI:22212705; contains Pfam profile PF03031:
           NLI interacting factor
          Length = 1241

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 493 GVSPTSMILAPASNCMISPDVTIGEIPSSINVPL 392
           G S T + +    N M+  DV  GEIP S+N  +
Sbjct: 7   GCSRTLIRMGNDENLMVMVDVEEGEIPDSVNTEI 40


>At1g57990.1 68414.m06572 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 390

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 228 EIAKPERKIQFRXKVLWTAITLFIFLV 308
           +I  P R ++ + K  W +++L IFLV
Sbjct: 22  QILSPRRSLELKQKKWWISVSLCIFLV 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,010
Number of Sequences: 28952
Number of extensions: 266501
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)