Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B17
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)               30   1.4  
SB_39450| Best HMM Match : Picorna_P3A (HMM E-Value=4.8)               29   4.4  
SB_48077| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +1

Query: 175 RSSREPSQSFHRVCTGSPVRAATSILSWPHYLSGCH*QHSXKEETR 312
           RS R+P QS H VCTG PV         P   SGC    S  +  R
Sbjct: 256 RSRRKPRQSRH-VCTGLPVVTTVDSTGPPQLSSGCSTNSSSSQTAR 300


>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
          Length = 738

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 375 YYQIANSLATPGTDVHLTTTRALILDNNLIINPDWSKFVHTAK 503
           YY  A   +  G  + L TT   I DN LI+NPD    +H A+
Sbjct: 472 YYLFAADGSAHGLSIKLRTTLKRIADN-LILNPDADPSLHAAE 513


>SB_39450| Best HMM Match : Picorna_P3A (HMM E-Value=4.8)
          Length = 284

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 309 PKSQKELFEVLNLPAEACKRERYYQIANSLATPGTDVHLTTTRALILDNNLIINPDWSK- 485
           P  Q+ L  ++    +A +R R   +A   +  G++    +    +   +L+I   W   
Sbjct: 82  PAYQQRLSHIMEEYHDAFQRARRLAVAREASLAGSE----SAMGAVTVEDLLIYTRWLVC 137

Query: 486 FVHTAKLLHIVRAPIKKHLTDHENPIXXXEITQDE 590
           ++H+ K +H     I+     H+N I   EI +DE
Sbjct: 138 YMHSVKRMHSFLRVIEWLPVMHKNTIKPQEIEKDE 172


>SB_48077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 471 PDWSKFVHTAKLLHIVRAPIKKHLTDHENPIXXXEITQDEESFGNSFLID 620
           P W  +V+   L  IVR  +   + D E+P      + D   +G   L+D
Sbjct: 160 PRWPTYVYPESLKAIVRLIVPGSVKDFEDPDHDSVASTDNLPYGLQLLVD 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,676,467
Number of Sequences: 59808
Number of extensions: 414929
Number of successful extensions: 1072
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)