Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B17
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 31 0.51
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 31 0.51
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 31 0.67
At3g42800.1 68416.m04480 expressed protein hypothetical proteins... 29 3.6
At5g65950.1 68418.m08302 expressed protein 28 6.2
At4g24805.1 68417.m03553 expressed protein 28 6.2
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam... 28 6.2
At2g34150.1 68415.m04180 expressed protein 28 6.2
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.5 bits (68), Expect = 0.51
Identities = 23/111 (20%), Positives = 47/111 (42%)
Frame = +3
Query: 279 SLAALGXGGDPKSQKELFEVLNLPAEACKRERYYQIANSLATPGTDVHLTTTRALILDNN 458
S+ LG G P+ ++++ + + + Y+I S A PG+ V + A I+
Sbjct: 520 SVRVLGEGYSPEDEEDM--TIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTA 577
Query: 459 LIINPDWSKFVHTAKLLHIVRAPIKKHLTDHENPIXXXEITQDEESFGNSF 611
+ N + + V+ + L P+ K T+ NP ++ + S+
Sbjct: 578 TLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSY 628
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.5 bits (68), Expect = 0.51
Identities = 23/111 (20%), Positives = 47/111 (42%)
Frame = +3
Query: 279 SLAALGXGGDPKSQKELFEVLNLPAEACKRERYYQIANSLATPGTDVHLTTTRALILDNN 458
S+ LG G P+ ++++ + + + Y+I S A PG+ V + A I+
Sbjct: 520 SVRVLGEGYSPEDEEDM--TIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTA 577
Query: 459 LIINPDWSKFVHTAKLLHIVRAPIKKHLTDHENPIXXXEITQDEESFGNSF 611
+ N + + V+ + L P+ K T+ NP ++ + S+
Sbjct: 578 TLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSY 628
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 31.1 bits (67), Expect = 0.67
Identities = 23/111 (20%), Positives = 47/111 (42%)
Frame = +3
Query: 279 SLAALGXGGDPKSQKELFEVLNLPAEACKRERYYQIANSLATPGTDVHLTTTRALILDNN 458
S+ LG G P+ ++++ + + + Y+I S A PG+ V + A I+
Sbjct: 506 SVRVLGEGYSPEDEEDM--TIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTA 563
Query: 459 LIINPDWSKFVHTAKLLHIVRAPIKKHLTDHENPIXXXEITQDEESFGNSF 611
+ N + + V+ + L P+ K T+ NP ++ + S+
Sbjct: 564 TLCNASYDEDVYIFRALKFNTLPVVKTATEPLNPSELPKMVEGLRKISKSY 614
>At3g42800.1 68416.m04480 expressed protein hypothetical proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 341
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 455 QSNNKPGLVQVCSHSKTTAYSASSNKETSNRPRKSD*XXRNNAR 586
QSN K V++CS KTT +SS+K +R R NN +
Sbjct: 172 QSNAKK--VKLCSVGKTTDVKSSSSKSCFSRTRNKTDNNNNNCK 213
>At5g65950.1 68418.m08302 expressed protein
Length = 865
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +3
Query: 108 LSKASHVFGNLIPPNICNEDQSQKFKGALAEFSSRLYRVAGQSSNFHFVVAP 263
L K+ HV + P C E Q K A +++ A SS F F AP
Sbjct: 804 LPKSEHVLSYKLVPLTCGEQQLPKITLTSARYAAEFQPSAVASSVFVFPSAP 855
>At4g24805.1 68417.m03553 expressed protein
Length = 247
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 301 EETRSRKRNYSKFSIYLPKHVNAKGITKLRIVWPRRE 411
E R R YS + Y+ +N KLR VW R+
Sbjct: 49 EGIRIRHHGYSSYEAYIKHQLNKTQNPKLRKVWTTRD 85
>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 854
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +1
Query: 331 SKFSIYLPKHVNAKGITKL--RIVWPRRELTSI 423
S+F + +PKH+++ GITK+ ++ P++E +
Sbjct: 115 SRFVLEIPKHLSSTGITKITFKLSKPKKEFDDL 147
>At2g34150.1 68415.m04180 expressed protein
Length = 700
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 447 LDNNLIINPDWSKFVHTAKLLHIVRAPI-KKHLTDHENPIXXXEITQDEESFGNSFLIDT 623
+ NN + D +K T++L H+ +P+ K H++P EI+ S+ N F
Sbjct: 280 ISNNFSV--DETKCAATSEL-HLSSSPVYKSDELIHQDPWAASEISSGTHSYSNGFSNPL 336
Query: 624 LDYSGL 641
D SG+
Sbjct: 337 YDISGI 342
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,348,232
Number of Sequences: 28952
Number of extensions: 286214
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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