Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B16
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 275 4e-75
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 153 2e-38
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 152 4e-38
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 125 5e-30
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 81 1e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 79 4e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 75 1e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 55 1e-08
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.083
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.77
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.77
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 275 bits (674), Expect = 4e-75
Identities = 126/141 (89%), Positives = 131/141 (92%)
Frame = +3
Query: 231 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 410
P +MVGMGQKDSYV DEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 411 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGD 590
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYA GRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 591 GVSHTVPIYEGYALPHAILRL 653
GV+HTVPIYEGYALPHAI+RL
Sbjct: 158 GVTHTVPIYEGYALPHAIMRL 178
Score = 86.6 bits (205), Expect = 3e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +2
Query: 122 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 244
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 153 bits (371), Expect = 2e-38
Identities = 69/134 (51%), Positives = 97/134 (72%), Gaps = 1/134 (0%)
Frame = +3
Query: 246 VMVGMGQKDSYVXDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 422
VM QKD +V EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 423 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSH 602
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYA RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 603 TVPIYEGYALPHAI 644
+VPIY+G+++P AI
Sbjct: 167 SVPIYDGFSIPSAI 180
Score = 52.4 bits (120), Expect = 5e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +2
Query: 140 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 241
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 152 bits (369), Expect = 4e-38
Identities = 66/129 (51%), Positives = 96/129 (74%)
Frame = +3
Query: 267 KDSYVXDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 446
KD V DEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 447 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGY 626
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
Query: 627 ALPHAILRL 653
L H + RL
Sbjct: 170 VLNHLVGRL 178
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 128 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 232
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 125 bits (302), Expect = 5e-30
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 9/134 (6%)
Frame = +3
Query: 270 DSYVXDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 446
D ++ ++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 447 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRT--------TGIVLDSGDGVSH 602
LNP NRE +IMFE+FN +Y+A+QAVL+L A + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 603 TVPIYEGYALPHAI 644
+P+ EGY + +I
Sbjct: 193 IIPVAEGYVIGSSI 206
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 140 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 223
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 81.4 bits (192), Expect = 1e-16
Identities = 39/107 (36%), Positives = 58/107 (54%)
Frame = +3
Query: 312 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 491
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 492 ETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGYAL 632
E+ PA Y+A Q + +A G+ T ++D G S IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 125 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 226
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 79.4 bits (187), Expect = 4e-16
Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Frame = +3
Query: 327 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 506
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 507 PAMYVAIQAVLSLYAXGR--TTGIVLDSGDGVSHTVPIYEG 623
P++ I + S Y + ++GIVL+ G+ SH +P+ G
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 140 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 235
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 74.5 bits (175), Expect = 1e-14
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Frame = +3
Query: 231 PAIRAVMVGMGQKDSYVXDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 404
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 405 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDS 584
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 585 GDGVSHTVPIYEGYALPHAILR 650
G + P+ +G + I +
Sbjct: 157 GSDNASVTPVVDGLIIRKGIFK 178
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 125 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 226
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 327 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 494
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 495 TFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEG 623
P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.083
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 387 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 530
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 532 PCSRCTRXVVPPVSCWTPATVSPTPCPSTRDTHSP 636
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 511 PCTSPSKPCSRCTRXVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 645
P T+P P T V P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 429 LLTEAPLNPKANREKMTQIMFETFN 503
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 CSKHSTRPPCTSPSKPCSRCTRXVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 645
C+ ++ PP T S S VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 CSKHSTRPPCTSPSKPCSRCTRXVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 645
C+ ++ PP T S S VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 514 CTSPSKPCSRCTRXVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 645
C +PS+ C + PV + T S TP P+T + +PTP+
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPT 865
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 443 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 592
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,641
Number of Sequences: 5004
Number of extensions: 60878
Number of successful extensions: 217
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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