Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B14
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   1.7  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   2.2  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    26   5.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.0  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 53  DISTRISCASGGGPGTVPQW 112
           D  T I CASG G G V  W
Sbjct: 73  DTKTLIDCASGSGDGAVKLW 92


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 367 RPDVQMYFILSWTIRALTHSFSSL 296
           + D+Q YF LSW I    H  S +
Sbjct: 183 KADIQCYFALSWLITWFAHDVSDI 206


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +3

Query: 273 MDLVSLETSDENEWVK----ARIVXDKIKYIWTSGRLCDFKGCNRPDLLPNEINGWFWTA 440
           MDLV   TSD++EW K    ++    +  Y W   R  + KG   P   PN    +F T+
Sbjct: 105 MDLVLNHTSDQHEWFKESRSSKTNPKRDWYFWKPARYNE-KGERLP---PNNWRSYFDTS 160

Query: 441 ELQKLAPTTNRQQNDWS 491
             +    T     + WS
Sbjct: 161 AWEWDEATQEYYLHLWS 177


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 303 ENEWVKARIVXDKIKYIWTSGRLCDFKGCNRPDLLPNEI 419
           +N W     + DK+  IW         G    D +PNE+
Sbjct: 853 KNYWGSISALCDKMSEIWADWVQRTSSGIQEEDTIPNEM 891


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 498 GGIGKPQPDNRELIQXGASEHCVAILN 578
           GG G    DN EL+  G + H    LN
Sbjct: 158 GGFGGSVVDNNELLSTGKNSHQTTSLN 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,342
Number of Sequences: 5004
Number of extensions: 52729
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)