Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B14
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17270.1 68414.m02103 expressed protein                             30   1.5  
At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.5  
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro...    28   4.4  
At1g72610.1 68414.m08396 germin-like protein (GER1) identical to...    28   4.4  
At1g30930.1 68414.m03786 F-box family protein contains F-box dom...    28   4.4  
At5g19060.1 68418.m02266 expressed protein ; expression supporte...    28   5.9  
At2g46915.1 68415.m05859 expressed protein  and genscan                27   7.8  

>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 171 YADNKGYFFSWR-DPALRGVEEDWLSARNYCRQRCMDLVSL---ETSDENEWVKARIVXD 338
           + D + +F S++ DP    V+E  L A N  RQ+ + LVSL      + +  + + +V D
Sbjct: 87  FTDTRTFFSSFKLDPMSSRVKESELQALNLLRQQQLALVSLLNRTNFNSSNAISSSVVID 146

Query: 339 KIK 347
            +K
Sbjct: 147 NVK 149


>At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 453

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 174 RISHGCFSVHTKKAPEAPGCVHWGTVPGPPP 82
           R  HGCF+   K++  +   + +GTV  PPP
Sbjct: 256 RDPHGCFAWMGKRSAASVAYISFGTVMEPPP 286


>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 1102

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 225 VEEDWLSARNYCRQRCMDLVSLETSDENEWVKARIVXDK 341
           V+  W      CR+  + L+ +ET  ++E+V  + V +K
Sbjct: 458 VDVSWQDGTIECRREAITLIPIETPGDHEFVSEQYVVEK 496


>At1g72610.1 68414.m08396 germin-like protein (GER1) identical to
           germin-like protein subfamily 3 member 1 SP|P94040;
           contains Pfam profile: PF01072 Germin family
          Length = 208

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 95  GTVPQWTHPGASGAFFVCT 151
           G +P  THPGAS   FV T
Sbjct: 95  GVIPMHTHPGASEVLFVLT 113


>At1g30930.1 68414.m03786 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 376

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 474 QQNDWSEXGGIGKPQPDNRELIQXGASEH 560
           Q  +WSE   +  PQP N  L+   A  H
Sbjct: 60  QDGEWSEWSFLSLPQPQNSSLVVESADIH 88


>At5g19060.1 68418.m02266 expressed protein ; expression supported
           by MPSS
          Length = 551

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +3

Query: 435 TAELQKLAPTTNRQQNDWSEXGGIGKPQPDN-RELIQXGASEHC----VAILNNFYNDGV 599
           ++E  ++    N   N+     G+   + D+ REL++    E      V I+N+  +DG+
Sbjct: 357 SSETVRITSIFNGHWNETQNYLGLDSLEDDSFRELLKSYFVEETGVPDVMIVNSGLHDGI 416

Query: 600 HWHDVRPXT 626
           HW ++R  T
Sbjct: 417 HWSNLRAFT 425


>At2g46915.1 68415.m05859 expressed protein  and genscan
          Length = 708

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/77 (23%), Positives = 30/77 (38%)
 Frame = -3

Query: 382 LKSQRRPDVQMYFILSWTIRALTHSFSSLVSRDTRSMQRCRQ*FLALNQSSSTPRSAGSR 203
           L SQ   D  ++ +LS  + ++ H+    +    R+     Q        +S PRS    
Sbjct: 122 LDSQDGGDADIFLLLSSCLDSILHAEHKRILEQMRADFVATQSLEEEELKNSEPRSVNGY 181

Query: 202 HEKKYPLLSAYLSWMFL 152
               +PL   +  W FL
Sbjct: 182 EGLSFPLADGFDIWNFL 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,444
Number of Sequences: 28952
Number of extensions: 300326
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)