Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B11
(657 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for ... 118 1e-26
BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein. 118 1e-26
CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein. 118 2e-26
AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant pr... 116 6e-26
BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I... 111 2e-24
AY054985-1|AAL14351.1| 486|Homo sapiens voltage-dependent calci... 31 4.8
BC019895-1|AAH19895.1| 373|Homo sapiens FBLIM1 protein protein. 30 6.3
AY180161-1|AAO49012.1| 373|Homo sapiens migfilin protein. 30 6.3
AL450998-6|CAH70854.1| 373|Homo sapiens filamin binding LIM pro... 30 6.3
AL450998-5|CAH70853.1| 276|Homo sapiens filamin binding LIM pro... 30 6.3
AL133035-1|CAB61365.1| 200|Homo sapiens hypothetical protein pr... 30 6.3
AK027444-1|BAB55115.1| 276|Homo sapiens protein ( Homo sapiens ... 30 6.3
AF459643-1|AAO15549.1| 374|Homo sapiens filamin-binding LIM pro... 30 6.3
>Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for
ribophorin I. ).
Length = 607
Score = 118 bits (285), Expect = 1e-26
Identities = 73/205 (35%), Positives = 113/205 (55%), Gaps = 8/205 (3%)
Frame = +1
Query: 61 LFFVLFL-TIQTLSASVDTISSDIKLKNVDRTVXISTQLVKVVSKIVLENSGKSSVKH-- 231
LF +L L T S + + + ++V RTV +S+ L KV +++VL + G S
Sbjct: 8 LFLLLLLGTWAPAPGSASSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRAT 67
Query: 232 -FLFAVEEAAXNNLXFIGAK----DSNSKDLRLAETTVKGYDYVKFWRVELKEPLNAGAT 396
FL A+E L +G + D +L + ET +KG +F+ V+L L+ GA
Sbjct: 68 SFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSG-RFFTVKLPVALDPGAK 126
Query: 397 VNVVVETVFTKALQPYPTAITXQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFT 576
++V+VETV+T L PYPT IT E QFV + GN Y YSPY T TQ V L ++ VES+T
Sbjct: 127 ISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYT 186
Query: 577 XVKPFSQVDGTIIYGPYANVGPFTE 651
+ ++ + + YGP+ +V +++
Sbjct: 187 KLGNPTRSEDLLDYGPFRDVPAYSQ 211
>BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein.
Length = 607
Score = 118 bits (285), Expect = 1e-26
Identities = 73/205 (35%), Positives = 113/205 (55%), Gaps = 8/205 (3%)
Frame = +1
Query: 61 LFFVLFL-TIQTLSASVDTISSDIKLKNVDRTVXISTQLVKVVSKIVLENSGKSSVKH-- 231
LF +L L T S + + + ++V RTV +S+ L KV +++VL + G S
Sbjct: 8 LFLLLLLGTWAPAPGSASSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRAT 67
Query: 232 -FLFAVEEAAXNNLXFIGAK----DSNSKDLRLAETTVKGYDYVKFWRVELKEPLNAGAT 396
FL A+E L +G + D +L + ET +KG +F+ V+L L+ GA
Sbjct: 68 SFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSG-RFFTVKLPVALDPGAK 126
Query: 397 VNVVVETVFTKALQPYPTAITXQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFT 576
++V+VETV+T L PYPT IT E QFV + GN Y YSPY T TQ V L ++ VES+T
Sbjct: 127 ISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYT 186
Query: 577 XVKPFSQVDGTIIYGPYANVGPFTE 651
+ ++ + + YGP+ +V +++
Sbjct: 187 KLGNPTRSEDLLDYGPFRDVPAYSQ 211
>CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein.
Length = 607
Score = 118 bits (284), Expect = 2e-26
Identities = 73/205 (35%), Positives = 113/205 (55%), Gaps = 8/205 (3%)
Frame = +1
Query: 61 LFFVLFL-TIQTLSASVDTISSDIKLKNVDRTVXISTQLVKVVSKIVLENSGKSSVKH-- 231
LF +L L T S + + + ++V RTV +S+ L KV +++VL + G S
Sbjct: 8 LFLLLLLGTWAPAPGSAPSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRAT 67
Query: 232 -FLFAVEEAAXNNLXFIGAK----DSNSKDLRLAETTVKGYDYVKFWRVELKEPLNAGAT 396
FL A+E L +G + D +L + ET +KG +F+ V+L L+ GA
Sbjct: 68 SFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSG-RFFTVKLPVALDPGAK 126
Query: 397 VNVVVETVFTKALQPYPTAITXQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFT 576
++V+VETV+T L PYPT IT E QFV + GN Y YSPY T TQ V L ++ VES+T
Sbjct: 127 ISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYT 186
Query: 577 XVKPFSQVDGTIIYGPYANVGPFTE 651
+ ++ + + YGP+ +V +++
Sbjct: 187 KLGNPTRSEDLLDYGPFRDVPAYSQ 211
>AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant
protein.
Length = 607
Score = 116 bits (280), Expect = 6e-26
Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 8/205 (3%)
Frame = +1
Query: 61 LFFVLFL-TIQTLSASVDTISSDIKLKNVDRTVXISTQLVKVVSKIVLENSGKSSVKH-- 231
LF +L L T S + + + ++V RTV +S+ L KV +++VL + G S
Sbjct: 8 LFLLLLLGTWAPAPGSASSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRAT 67
Query: 232 -FLFAVEEAAXNNLXFIGAK----DSNSKDLRLAETTVKGYDYVKFWRVELKEPLNAGAT 396
FL A+E L +G + D +L + ET +KG +F+ V+L L+ GA
Sbjct: 68 SFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSG-RFFTVKLPVALDPGAK 126
Query: 397 VNVVVETVFTKALQPYPTAITXQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFT 576
++V+VETV+T L PYPT IT E QFV + GN Y Y PY T TQ V L ++ VES+T
Sbjct: 127 ISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYPPYPTKTQTMRVKLASRNVESYT 186
Query: 577 XVKPFSQVDGTIIYGPYANVGPFTE 651
+ ++ + + YGP+ +V +++
Sbjct: 187 KLGNPTRSEDLLDYGPFRDVPAYSQ 211
>BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I
protein.
Length = 568
Score = 111 bits (267), Expect = 2e-24
Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 7/173 (4%)
Frame = +1
Query: 154 VXISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAXNNLXFIGAK----DSNSKDLR 312
V +S+ L KV +++VL + G S FL A+E L +G + D +L
Sbjct: 1 VDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLE 60
Query: 313 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITXQEDQFVKYVG 492
+ ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT IT E QFV + G
Sbjct: 61 VRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEG 119
Query: 493 NLYTYSPYYTSTQKTSVILNTKTVESFTXVKPFSQVDGTIIYGPYANVGPFTE 651
N Y YSPY T TQ V L ++ VES+T + ++ + + YGP+ +V +++
Sbjct: 120 NHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPAYSQ 172
>AY054985-1|AAL14351.1| 486|Homo sapiens voltage-dependent calcium
channel beta-4a subunit protein.
Length = 486
Score = 30.7 bits (66), Expect = 4.8
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Frame = +1
Query: 67 FVLFLTIQTLSASVDTISSD---IKLKNVDRTVXISTQLVKVVSKIVLENSGKSSVKHFL 237
F L ++Q + DTI+ IK V + KV+ +++ ++ GKS KH
Sbjct: 266 FELARSLQLVVVDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLI-KSRGKSQSKHL- 323
Query: 238 FAVEEAAXNNLXFIGAK--DSNSKDLRLAETTVKGYDYVK-FWRVELKEPLNAGATVNVV 408
V+ A + L + D + +L + +Y++ +WR ++ ++
Sbjct: 324 -NVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRAT--HTTSSTPMTPLL 380
Query: 409 VETVFTKALQPYPTAITXQEDQFVKYVGNLYTYSPYYTSTQKTS 540
+ + AL PYPTAI+ + Q +++ + SP + TS
Sbjct: 381 GRNLGSTALSPYPTAISGLQSQRMRHTNHSTENSPIERRSLMTS 424
>BC019895-1|AAH19895.1| 373|Homo sapiens FBLIM1 protein protein.
Length = 373
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 KRRCHSKC-CCRNCVHQSFTTISDSYNSXRRPVCEICWQ 494
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AY180161-1|AAO49012.1| 373|Homo sapiens migfilin protein.
Length = 373
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 KRRCHSKC-CCRNCVHQSFTTISDSYNSXRRPVCEICWQ 494
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AL450998-6|CAH70854.1| 373|Homo sapiens filamin binding LIM
protein 1 protein.
Length = 373
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 KRRCHSKC-CCRNCVHQSFTTISDSYNSXRRPVCEICWQ 494
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AL450998-5|CAH70853.1| 276|Homo sapiens filamin binding LIM
protein 1 protein.
Length = 276
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 KRRCHSKC-CCRNCVHQSFTTISDSYNSXRRPVCEICWQ 494
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140
>AL133035-1|CAB61365.1| 200|Homo sapiens hypothetical protein
protein.
Length = 200
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 KRRCHSKC-CCRNCVHQSFTTISDSYNSXRRPVCEICWQ 494
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 28 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 64
>AK027444-1|BAB55115.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ14538 fis, clone NT2RM2001324, weakly similar to
ZYXIN. ).
Length = 276
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 KRRCHSKC-CCRNCVHQSFTTISDSYNSXRRPVCEICWQ 494
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140
>AF459643-1|AAO15549.1| 374|Homo sapiens filamin-binding LIM
protein-1 protein.
Length = 374
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 KRRCHSKC-CCRNCVHQSFTTISDSYNSXRRPVCEICWQ 494
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,186,755
Number of Sequences: 237096
Number of extensions: 1767703
Number of successful extensions: 4174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4147
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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