Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B11
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    89   3e-18
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41532-8|AAK68318.1|  331|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical pr...    30   1.7  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   8.9  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   8.9  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    27   8.9  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   8.9  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   8.9  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   8.9  
AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin...    27   8.9  

>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
 Frame = +1

Query: 130 KLKNVDRTVXISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAXNNLXFIGAKDSNSKD- 306
           K  NVDRT+  ++Q+VKV +    EN G       L A+ +     L FI A    SK  
Sbjct: 20  KAANVDRTIDATSQIVKVSTLYSFENVGNGPQSKVLIALSKEESATLSFISAGIDGSKGK 79

Query: 307 LRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITXQEDQFVKY 486
           L+++E   +    +  + V+L+ P+  GA V + +    T+ L+P P+ I   + QFV  
Sbjct: 80  LKISEKPAE--KDLAVYEVDLRTPVAKGAKVTIRINLRITQVLEPLPSKIQQSDSQFVVL 137

Query: 487 VGNLYTYSPYYTSTQKTSV-ILNTKTVESFTXVKPFSQVDGTIIYGPYANVGPFTEK 654
             + Y  S Y T TQKT++       + S T V P  Q    +IYGPY N+  F  K
Sbjct: 138 HTSAYVPSLYETVTQKTTIRTTQGGKLLSATTVSPSKQETERVIYGPYVNIPAFETK 194


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 387 RCHSKCCCRNCVHQSFTTISDSYNSXRRPVC 479
           RC SK C  NC +  F  + D+  S  R +C
Sbjct: 109 RCSSKDCNHNCTNTEFDPVCDTNGSVYRNLC 139


>U41532-8|AAK68318.1|  331|Caenorhabditis elegans Hypothetical
           protein F11D5.1b protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 502 TYSPYYTSTQKTSVILNTKTVE 567
           TYSP YTST   SV L++K VE
Sbjct: 53  TYSPSYTSTSLNSVSLSSKYVE 74


>U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical
           protein F11D5.1c protein.
          Length = 769

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 502 TYSPYYTSTQKTSVILNTKTVE 567
           TYSP YTST   SV L++K VE
Sbjct: 491 TYSPSYTSTSLNSVSLSSKYVE 512


>U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical
           protein F11D5.1a protein.
          Length = 812

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 502 TYSPYYTSTQKTSVILNTKTVE 567
           TYSP YTST   SV L++K VE
Sbjct: 534 TYSPSYTSTSLNSVSLSSKYVE 555


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 482 NMLAICIHTPRTI 520
           +M+ +CIHTPRTI
Sbjct: 61  SMITVCIHTPRTI 73


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 482 NMLAICIHTPRTI 520
           +M+ +CIHTPRTI
Sbjct: 61  SMITVCIHTPRTI 73


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 482 NMLAICIHTPRTI 520
           +M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 482 NMLAICIHTPRTI 520
           +M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 482 NMLAICIHTPRTI 520
           +M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 482 NMLAICIHTPRTI 520
           +M+ +CIHTPRTI
Sbjct: 91  SMITVCIHTPRTI 103


>AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin
           protein 2 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 608 VPSTCEKGFTLVNDSTVFVFR 546
           +PS C  GFTLVN   + +F+
Sbjct: 17  LPSVCTDGFTLVNGKCLMMFK 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,624
Number of Sequences: 27780
Number of extensions: 301447
Number of successful extensions: 871
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)