Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B11
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01720.1 68415.m00100 ribophorin I family protein similar to ...    93   1e-19
At1g76400.1 68414.m08878 ribophorin I family protein similar to ...    91   8e-19
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    33   0.22 
At5g49390.1 68418.m06112 hypothetical protein                          28   4.8  
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...    27   8.3  

>At2g01720.1 68415.m00100 ribophorin I family protein similar to
           SP|P04843 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin I) {Homo sapiens}; contains Pfam
           profile PF04597: Ribophorin I
          Length = 464

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 9/198 (4%)
 Frame = +1

Query: 67  FVLFLTIQTLSASVDTISSDIKLKNVDRTVXISTQLVKVVSKIVLENSGKSSVKHFLFAV 246
           F +F+ +  LS S  + + D+++ N +R + +S+ +VK    + +EN GK      L A 
Sbjct: 8   FSVFVAV-LLSISAFSSAQDLQIVNAERRIDLSSHIVKAFLTLKVENIGKDPAAEMLLAF 66

Query: 247 EEAAXNNLXFIGAKDSNSK---------DLRLAETTVKGYDYVKFWRVELKEPLNAGATV 399
                 NL  + A  +  K         D++  E      D   ++RV    PL  G TV
Sbjct: 67  PPTQIKNLAMVQALATTGKKKKKTYLPLDVKPTEQPDAPND-TGYYRVTFISPLGPGETV 125

Query: 400 NVVVETVFTKALQPYPTAITXQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTX 579
           ++ V  + T +L+P+P  IT  E Q V Y  +    SPY+   Q T +   +  VESFT 
Sbjct: 126 SLEVLYILTHSLEPFPVEITQSESQLVYYHDSAVILSPYHVKQQTTFIKTPSTRVESFTS 185

Query: 580 VKPFSQVDGTIIYGPYAN 633
           ++P ++    I YGPY N
Sbjct: 186 IEPANRAGKEIKYGPYEN 203


>At1g76400.1 68414.m08878 ribophorin I family protein similar to
           ribophorin I [Sus scrofa] GI:9857227; contains Pfam
           profile PF04597: Ribophorin I
          Length = 614

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
 Frame = +1

Query: 73  LFLTIQTLSASVDTISSDIKLKNVDRTVXISTQLVKVVSKIVLENSGKSSVKHFLFAVEE 252
           L L +  ++       SD+ L  V+R + +++Q+ +V   + + NSG  SV  F     +
Sbjct: 9   LLLLLLAIALLATPAFSDLVLSKVERRIDVTSQIARVTKTLKVVNSGSESVSEFALTFPK 68

Query: 253 AAXNNLXFIGAKDSNSK--------DLRLAETTVKGY-DYVKFWRVELKEPLNAGATVNV 405
              NNL ++    S  K        +L + E   KG  D +  + V L +PL+ G T+ +
Sbjct: 69  FLGNNLAYLSVAPSEGKGKSKRTLVNLSVREADQKGLPDSISVYSVALPKPLSKGDTLTL 128

Query: 406 VVETVFTKALQPYPTAITXQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTXVK 585
            V   FT  LQP+P  IT  E   V    +    SPY   +Q  S+ L    +ES+T  +
Sbjct: 129 EVVAAFTNVLQPFPEKITQGEIHLVMLQESAQYLSPYAVESQSLSIKLPNARIESYTKFE 188

Query: 586 PFSQVDGTIIYGPYANVGPFT 648
                   + YGPY N+  ++
Sbjct: 189 NTKLQGSELKYGPYKNLQSYS 209


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
 Frame = +1

Query: 79  LTIQTLSASVDTISSDIK-LKNVDRTVXISTQLVKVVSKIVLENSGKSSVKHFLFAVEEA 255
           + I+ L   +D+    IK  K +++ V + +++V    K     S   ++K  + AVEEA
Sbjct: 429 IKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEA 488

Query: 256 A-----XNNLXFIGAKDSNSKD 306
           A      +   F+GA+D+ +KD
Sbjct: 489 AQASSRKSKWQFMGARDAGAKD 510


>At5g49390.1 68418.m06112 hypothetical protein
          Length = 422

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
 Frame = +1

Query: 244 VEEAAXNNLXFIGAKDSNSKDLRLAET---TVKGYDYVKFWRVELKEPLNAGATVNVVVE 414
           +EEA  +N     A  ++S  +  AE     V         ++E+ EP N G T      
Sbjct: 251 MEEADPHNSNATAASSASSTQMEDAEPYNPDVTAASSTCSTQMEVAEPYNPGVTAASSTS 310

Query: 415 TVFTKALQPYPTAITXQEDQFVKYVGNLYTYSPYYTSTQKTSV 543
           +   +   PY   +T      +  +     Y+P  T+   TS+
Sbjct: 311 STQMEEADPYNPDVTAASSTSITPMEVAEPYNPDVTAASSTSI 353


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1703

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
 Frame = +1

Query: 97   SASVDTISSDIKLKNVDRTVXISTQLVKVVSKIVLEN---SGKSSVKHFLF--AVEEAAX 261
            S S + +S+ +K      T  +  +L++++ KIVL+N   SG  ++++ L   A++    
Sbjct: 996  SKSPEQVSAAVK---AFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPS 1052

Query: 262  NNLXFIGAKDSNSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 420
              + +I   D N     + E  V+   Y + + +  K  LN  A VNV+++ V
Sbjct: 1053 RVMDYINRLD-NFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQA-VNVLLDNV 1103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,437,410
Number of Sequences: 28952
Number of extensions: 268397
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)