Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B09
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   255   5e-69
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   255   5e-69
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.8  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   7.1  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   9.4  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  255 bits (624), Expect = 5e-69
 Identities = 117/160 (73%), Positives = 134/160 (83%)
 Frame = +3

Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
           M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H
Sbjct: 9   MKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACH 68

Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
            TVRG KAE IL RGLKV+ YEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIYG+DFY
Sbjct: 69  VTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFY 128

Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQKYD 587
           VV+ RPG  V  R+ + G+VG+ H++  ED + WF+QKYD
Sbjct: 129 VVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  255 bits (624), Expect = 5e-69
 Identities = 117/160 (73%), Positives = 134/160 (83%)
 Frame = +3

Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
           M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H
Sbjct: 9   MKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACH 68

Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
            TVRG KAE IL RGLKV+ YEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIYG+DFY
Sbjct: 69  VTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFY 128

Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQKYD 587
           VV+ RPG  V  R+ + G+VG+ H++  ED + WF+QKYD
Sbjct: 129 VVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 261 GYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQHI 145
           G     +Y   W I A +L V P PWR+ S+   + + I
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSSQRGLRKSI 159


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 120 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 263
           H++ +  N  +G        A K+ +QLTG+           R  GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 574 WNHFIASSFVRRW 536
           W+H+I++SF+ +W
Sbjct: 519 WSHYISASFLSKW 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,462
Number of Sequences: 5004
Number of extensions: 50852
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)