Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B09
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              287   5e-78
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               28   5.7  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   7.5  
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  287 bits (704), Expect = 5e-78
 Identities = 133/158 (84%), Positives = 144/158 (91%)
 Frame = +3

Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
           M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+VH
Sbjct: 4   MKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKISVH 63

Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
           CTVRG KAE IL +GLKV+ YEL +  FSATGNFGFGIQEHIDLGIKYDPSIGIYG+DF+
Sbjct: 64  CTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFF 123

Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQK 581
           VVLGRPGFN+  R+ K G+VGFPHRLTK+DAMKWFQQK
Sbjct: 124 VVLGRPGFNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 163 VTG*LVPPRCWSNSQDNSLYFP 228
           VT  LVPP  W+ SQD  +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 192 TPWRHESACHRIHQHICSSKAF*YEDSALHF*NYPSEPXXPFYLSST 52
           T  R +S   R  +  CS+K+  +   A HF N+   P  PFY S T
Sbjct: 565 TSRRFQSRPQRCPRRRCSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -3

Query: 397 PKPKLPVAEKL-SRRNSYXLTFKPLSRIXSALAPRTVQWTAIFSLRRIPKDRT 242
           P P++P +  L S + S    +KP+SRI ++L+  ++Q   ++  + +P+  T
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPRIST 201


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 357 RRDNFSATGNFGFGIQEHIDLGIKYD 434
           ++ ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 162 GDRLTRAAKVLEQLTGQQPVFSKARY 239
           G R TR A   +QLT  + VFSK  Y
Sbjct: 66  GSRRTRTAFTHQQLTALEKVFSKTHY 91


>SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 223 FPRLGIQCGLLVSVVMKRLLSIVQSEELKQXK 318
           F  L +  GL+ +++ KRLLSI  S + ++ K
Sbjct: 196 FSALSLVSGLMAAIIAKRLLSIKTSRDSEKHK 227


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 340 TFKPLSRIXSALAPRTVQWTAIFSLRRIPKDR 245
           T KP S +     P+  +WTA   L   PK+R
Sbjct: 389 TLKPRSILPDGRTPKNPEWTACVKLGMNPKER 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,289,849
Number of Sequences: 59808
Number of extensions: 393989
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)