Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B09
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   272   1e-73
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   272   1e-73
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      29   3.8  
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    28   5.0  
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   6.6  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  272 bits (668), Expect = 1e-73
 Identities = 126/161 (78%), Positives = 141/161 (87%)
 Frame = +3

Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
           MR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIAVH
Sbjct: 19  MRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVH 78

Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
           CTVRG KAE IL +GLKV+ YEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+DFY
Sbjct: 79  CTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFY 138

Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 590
           VVL R G  +  RRR  G+VG  HR+ +E+++KWFQQKYDG
Sbjct: 139 VVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDG 179


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  272 bits (667), Expect = 1e-73
 Identities = 126/161 (78%), Positives = 139/161 (86%)
 Frame = +3

Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
           MR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIAVH
Sbjct: 19  MRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVH 78

Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
           CTVRG KAE IL +GLKV+ YEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+DFY
Sbjct: 79  CTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFY 138

Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 590
           VVL R G  V  RRR  G++G  HR+ KE+ +KWFQQKYDG
Sbjct: 139 VVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDG 179


>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
            Y76A2B.1 protein.
          Length = 1057

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +1

Query: 358  GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTEGVRQEKWDFP 537
            GV +S PR I ASV  + +   SST         T  ++   +    H     QE    P
Sbjct: 946  GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005

Query: 538  TASQRKM 558
            T S R M
Sbjct: 1006 TPSSRNM 1012


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
            protein Y76A2B.1 protein.
          Length = 1057

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +1

Query: 358  GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTEGVRQEKWDFP 537
            GV +S PR I ASV  + +   SST         T  ++   +    H     QE    P
Sbjct: 946  GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005

Query: 538  TASQRKM 558
            T S R M
Sbjct: 1006 TPSSRNM 1012


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +1

Query: 358  GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTEGVRQEKWDFP 537
            GV +S PR I ASV  + +   SST         T  ++   +    H     QE    P
Sbjct: 946  GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005

Query: 538  TASQRKM 558
            T S R M
Sbjct: 1006 TPSSRNM 1012


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 291 TVRGAKAEXILXRGLKVRXY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 449
           ++R   AE +  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 432 DPSIGIYGLDFYVVLGRPGFNVXHRRRKTGKVGFPHRLTKE 554
           DP  GI G+  + V G   F +  R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 308 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 207
           F SS+C ++SNL+  T+     C  SL   RLLS
Sbjct: 97  FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 299 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 186
           S CT+D   F   D+K+  C+ S+ K   Y +++ E+  H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,344
Number of Sequences: 27780
Number of extensions: 286079
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)