Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B09
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 250 6e-67
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 249 1e-66
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 249 1e-66
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 249 1e-66
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 249 1e-66
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 45 4e-05
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 30 1.5
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 3.5
At4g14280.1 68417.m02201 hypothetical protein 28 6.1
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 28 6.1
At4g26330.1 68417.m03786 subtilase family protein contains simil... 27 8.1
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 27 8.1
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 8.1
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 8.1
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 250 bits (612), Expect = 6e-67
Identities = 119/161 (73%), Positives = 134/161 (83%)
Frame = +3
Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
TVRG KA +L GLKV+ YEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 590
VVL RPG+ V RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 121 VVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEG 161
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 249 bits (610), Expect = 1e-66
Identities = 119/161 (73%), Positives = 134/161 (83%)
Frame = +3
Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 11 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70
Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
TVRG KA +L GLKV+ YEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 71 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 590
VVL RPG+ V RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 131 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 249 bits (610), Expect = 1e-66
Identities = 119/161 (73%), Positives = 134/161 (83%)
Frame = +3
Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
TVRG KA +L GLKV+ YEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 590
VVL RPG+ V RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 161
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 249 bits (610), Expect = 1e-66
Identities = 119/161 (73%), Positives = 134/161 (83%)
Frame = +3
Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 11 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70
Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
TVRG KA +L GLKV+ YEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 71 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 590
VVL RPG+ V RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 131 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 249 bits (610), Expect = 1e-66
Identities = 119/161 (73%), Positives = 134/161 (83%)
Frame = +3
Query: 108 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 287
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 11 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70
Query: 288 CTVRGAKAEXILXRGLKVRXYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 467
TVRG KA +L GLKV+ YEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 71 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
Query: 468 VVLGRPGFNVXHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 590
VVL RPG+ V RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 131 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 45.2 bits (102), Expect = 4e-05
Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Frame = +3
Query: 123 IRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCT 293
++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++ + + T
Sbjct: 86 VQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVT 145
Query: 294 VRGAKAEXILXRGL-----KVRXYE-LRRDNFSATGNFGFGIQEH-IDLGIKYDPSIGIY 452
+RG L R + + R ++ + +F GN+ G+++ + I++D
Sbjct: 146 LRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTR 205
Query: 453 GLD 461
G+D
Sbjct: 206 GMD 208
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +3
Query: 318 ILXRGLKVRXYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 479
+L +GLK Y + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 284 MLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 274 FSLRRIPKDRTVYLALENTGCCPVSCSN-TLAARVSLSPDSPTHM 143
FSLR P DR+ E P CSN + ++ L P++ TH+
Sbjct: 243 FSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEASTHV 287
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 409 TLTWVSSTIPQLEFMDWTFTS 471
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 319 IXSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCCPVSCSNTL 185
I S L R +W + SLR++ KDR A++ GC + +N +
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRK---AVKVPGCSSIEVNNVV 479
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 391 PKLPVAEKLSRRNSYXLTFKPLSRIXSALAPRTVQWTAIFSLRRIPKDRTVYLA 230
P++ V K + +SY +TFKP + WT L R+ V+L+
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTN--GLHRVRSPVVVFLS 738
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 358 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 489
G+ + R+ +F + TLTW +S +P L + W + S ++
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 101 KCNAESSYQKALLEHMCW 154
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 101 KCNAESSYQKALLEHMCW 154
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,895
Number of Sequences: 28952
Number of extensions: 266839
Number of successful extensions: 668
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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