Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B08
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603...    33   0.20 
10_08_0101 - 14789994-14790205,14790290-14790957,14791232-147913...    30   1.9  
04_03_0521 + 16765347-16767324,16769202-16769392                       28   7.5  
04_03_0512 + 16675940-16677193,16677325-16677853,16678920-166789...    28   7.5  

>06_03_1360 +
           29558789-29559020,29559203-29559378,29560285-29560346,
           29560426-29561212,29561516-29562244
          Length = 661

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 208 SKPNNPLRNFDYHSCSGYCLERLCKS-QMNNRLARLKIYC 92
           S+P+    +  YH CS YCL ++ KS + N+R +R+  +C
Sbjct: 12  SRPDCVNSSNPYHECSDYCLRQIVKSREDNHRWSRVHPHC 51


>10_08_0101 -
           14789994-14790205,14790290-14790957,14791232-14791345,
           14794826-14794932
          Length = 366

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 451 NIXXECDVXNMIETAAKHGHFIDIKVEPAEXEDT 552
           NI    D   MIE AAKHG   DI+V  A+  +T
Sbjct: 305 NIGGMADTQEMIELAAKHGVTADIEVIGADDVNT 338


>04_03_0521 + 16765347-16767324,16769202-16769392
          Length = 722

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 379 DMVLVIVEDEPXDGYXEIVNKFEKNIXXECDVXNMIETAAKHGHFIDIKVEPAE 540
           D  ++I ED    G       F   I   C +  + +   K  H +DI V P+E
Sbjct: 277 DKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE 330


>04_03_0512 +
           16675940-16677193,16677325-16677853,16678920-16678999,
           16679450-16679533
          Length = 648

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 379 DMVLVIVEDEPXDGYXEIVNKFEKNIXXECDVXNMIETAAKHGHFIDIKVEPAE 540
           D  ++I ED    G       F   I   C +  + +   K  H +DI V P+E
Sbjct: 256 DKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,032,397
Number of Sequences: 37544
Number of extensions: 222136
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)