Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B08
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20980| Best HMM Match : AlaDh_PNT_N (HMM E-Value=0.11)              31   0.62 
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  

>SB_20980| Best HMM Match : AlaDh_PNT_N (HMM E-Value=0.11)
          Length = 253

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 331 KFYTIKMDE-ADIKTEXDMVLVIVEDEPXDGYXEIVNKFEKNIXXECDVXNMIETAAK 501
           K++T + D+   +KT+ D  ++I++D+P  G  E++ +F +      D+  M+    K
Sbjct: 73  KYHTRERDQQTQLKTQIDTFILILQDQP--GAKEVIGRFTRGGGAILDIEYMLNEEGK 128


>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 163 SGYCLERLCKSQMNNRLARLKIYCRKSQLCRLKSEEI 53
           +G  LER+C++   N + ++K  C+  Q C + +  I
Sbjct: 216 AGLNLERVCETNPGNTMQKVKGQCQNEQACEVVASNI 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,787
Number of Sequences: 59808
Number of extensions: 297578
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)