Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B08
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81142-9|CAB03501.2|  370|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine re...    29   2.2  
AF016420-4|AAB65308.1|  703|Caenorhabditis elegans Na/ca exchang...    29   3.8  
AC006672-1|AAK84544.1|  305|Caenorhabditis elegans Hypothetical ...    28   5.0  

>Z81142-9|CAB03501.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK1037.1 protein.
          Length = 370

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -1

Query: 474 NITLXXYIF--FKFIYNLXVPVSGFIFNDNQDHVVFSFN---ISFVHFYCVKFEHVLXLA 310
           N+ L  ++F   K IY      S FI +    HVVFS N   IS    YC +FEHVL ++
Sbjct: 303 NVNLTNFLFPSLKRIYPTSTVYSKFIAH----HVVFSNNNKIISTDPIYCDQFEHVLNVS 358


>AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine
           receptor, class t protein9 protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 46  INLFPRFL--NDTIEIFCNIF*AWQADCSFVIYITFLNSIR 162
           I LF RF+    T+ I  +I   W + C  + Y+TF  +IR
Sbjct: 255 IYLFMRFIYYTPTLIILSHIIWGWSSGCMCIAYLTFNRTIR 295


>AF016420-4|AAB65308.1|  703|Caenorhabditis elegans Na/ca exchangers
           protein 8 protein.
          Length = 703

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 381 VVFSFNISFVHFYCVKFEHVLXLAFGHSNFVLLLMLLGFH 262
           +V +F   F+  + V++ H + L F   NFV+ + L  FH
Sbjct: 659 LVTTFVALFIERFTVRWPHAVALIFIFINFVIFVCLAEFH 698


>AC006672-1|AAK84544.1|  305|Caenorhabditis elegans Hypothetical
           protein K08D12.5 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 447 FKFIYNLXVPVSGFIFNDNQDHVVFSFNISF 355
           + F ++L   V G IFN+  D   F F +SF
Sbjct: 22  YAFKFHLSTLVDGIIFNNEDDPTPFDFALSF 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,206,849
Number of Sequences: 27780
Number of extensions: 233643
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)