Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B08
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy cha...    29   3.6  
At3g48580.1 68416.m05304 xyloglucan:xyloglucosyl transferase, pu...    27   8.2  

>At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy
           chain-related low similarity to Inter-alpha-inhibitor H4
           heavy chain [Rattus norvegicus] GI:2292988; contains
           Pfam profile PF00092: von Willebrand factor type A
           domain
          Length = 758

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 314 WHSDTVILFCY*CFWGSTRTVKLFKFRCNF 225
           W SD   +FC   F G+T+  KLFK R  F
Sbjct: 302 WDSDDRGIFCLYLFPGTTKHTKLFKRRVVF 331


>At3g48580.1 68416.m05304 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           endoxyloglucan transferase EXGT-A4 GI:5139002 from
           [Arabidopsis thaliana]
          Length = 277

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 257 FWWNPKSINNKTKLLCPNA 313
           FWWN K +++K K L  NA
Sbjct: 232 FWWNRKQLSSKEKTLYLNA 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,029,798
Number of Sequences: 28952
Number of extensions: 198301
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)