Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B06
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    68   1e-12
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    35   0.012
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    31   0.15 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   3.1  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   5.5  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   5.5  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   7.3  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   9.6  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   9.6  

>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
 Frame = +1

Query: 283 LHELTLQAMAYDLLPIENDVYKYD--ASQGQLKEV-LLDENDDLWVELRHQHIAVVSTAV 453
           LHE T QAM +DLLPI+N+ Y Y+    QG  K    LD++D ++  +RH H+      +
Sbjct: 243 LHEFTYQAMIHDLLPIKNEQYPYEILGPQGTEKRTGKLDDDDLVYTTIRHMHMRDAIEKL 302

Query: 454 TKNLXKFTESKRMGGGDKQ---SMRDLSQMIKKMPQYQKELSKYATHLRLAEDCMKSYQ 621
            K+  +F     +   DK+   S+ D+  M+  +  +Q+   +Y+ HL +A++CM  ++
Sbjct: 303 MKDFNQFCIDNTL-FLDKERATSLNDMRSMLAGLSDFQELRDQYSLHLTMAQECMNIFE 360



 Score = 29.5 bits (63), Expect = 0.45
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = +3

Query: 57  MERIAEQIATLCATLGEYPSVRY-------RSDWERNVELAQLIQQKLDAYKADEPTMGE 215
           + ++A  I ++C +LG  P++R         +    +  LA  + + ++ Y +  P   E
Sbjct: 163 LSKVAHGIFSVCVSLGISPNIRCYYPKNAPHASKTMSFILANQLSEIVEEYCSKHPGYHE 222

Query: 216 GPEKARSQLLVLDRGFDCVSPF 281
              K  S  L++DR  D  +PF
Sbjct: 223 AASK--STCLIVDRSLDTAAPF 242


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
 Frame = +1

Query: 280 LLHELTLQAMAYDLLPIENDVYKYDASQG---QLKEVLLDEN-DDLWVELRHQHIAVVST 447
           LL + T QAM ++L  I+N    +  S     +  E++L+   D  + E R  +   +  
Sbjct: 226 LLTQWTYQAMVHELFGIDNGRVSFSNSTSDNEKSTEIVLNPTLDPFYKETRFDNFGDLGV 285

Query: 448 AVTKNLXKFTESKRMGGGDKQSMRDLSQMIKKMPQYQKELSKYATHLRLAEDCMKSYQ 621
            +   +            + +S+ D+ Q ++  P+Y++     + H+ L  +  +  Q
Sbjct: 286 KIKDYVSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVSKHVSLVSEISQVVQ 343


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 42  TRNANMERIAEQIATL--CATLGEYPSVRYRSDWERNVELAQLIQQKLDAYKADEPT 206
           T N   +  A+ + ++   A + E P       W+  +ELA+ + QK D    DEPT
Sbjct: 534 TMNVTRQEAADALHSVGFTAEMQENPVASLSGGWKMKLELARAMLQKADILLLDEPT 590


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 640  EFVYISXGSFSCSLQRGANVLHI*TAPFDIEAFSLSF 530
            E V +  GS SC  +RG     + TA F ++   L F
Sbjct: 1194 ELVELHNGSMSCQSRRGVGTRFMWTATFTMDKTPLKF 1230


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 508 QSMRDLSQMIKKMPQYQKELSKYATHLRLAEDCMKSYQXI 627
           + M DL+   ++M  + K LS+YA HL  A+ C   ++ I
Sbjct: 379 ERMMDLNVAEERMIDW-KCLSEYANHLWTADACKSHFERI 417


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 379 VLLDENDDLWVELRHQHIAVVSTAVTKNLXKFTESKRMGGG--DKQSMRDLSQMI 537
           +LL+  DD +++LRH  I+     +++ +    + ++      D  ++RD+S  +
Sbjct: 184 LLLNRRDDGYIDLRHFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDISDYV 238


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +1

Query: 367 QLKEVLLDENDDLWVELRHQHIAVVSTAVTKNLXKFTESKRMGGGDKQS 513
           +L +++ DEN++L   +R+  ++  +TA      K     R+ G D+++
Sbjct: 410 KLNKIIKDENENLKEYIRNNSLSFQATAGELTQCKQLPQPRITGNDQEN 458


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +1

Query: 298 LQAMAYDLLPIENDVYKYDASQGQLKEVLLDENDDLWVELRHQHIAVVSTAVTKNLXKFT 477
           ++  +Y ++P        ++   +   VLL   D+  ++L    +  V   +TK+L  F 
Sbjct: 107 IKVWSYQIIPEPTISNSIESHLRKCLMVLLSRVDE--IDLADVLVKTVLPLITKHLRLFV 164

Query: 478 ESKRMGGGDKQ-SMRDLSQMIKKM 546
           E++++  G+K  S  D S++ +++
Sbjct: 165 EAEQLVVGNKAVSFTDHSELSREV 188


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = -2

Query: 400 HHFHPRELPLTAPGMHHTCKHHFQLAEDRKPWLEELVRVVNGDTQSNPRSRTRS*ERAFS 221
           H  +P   PL +P   HT       +   KP    L   +  DT S+  S +RS E   S
Sbjct: 7   HIEYPNTPPLHSPPESHTFSSQTDDSYFHKPSSTGLFATLVADTNSSVPSASRSPESIAS 66

Query: 220 GPS 212
             S
Sbjct: 67  SQS 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,558
Number of Sequences: 5004
Number of extensions: 53717
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)