Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B05
         (567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    28   0.064
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   4.2  

>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 0.064
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +1

Query: 142 LTSCTLITHIIIMEDKASLKELDQWIQQLNECKQLTENQVKTLCDKAKEILTKESNVQXV 321
           LT  + + ++I+ E    LK  DQ  +   +C  L + +     +K K+ +T+      V
Sbjct: 14  LTYVSSVEYLILREIDTILKN-DQMTRNYLDCV-LDKGKCTKEAEKLKKGITETMKNGCV 71

Query: 322 KCPVTVCGDVHGQFHDLM 375
           KC      DVH  F  LM
Sbjct: 72  KCEQKQKEDVHKVFQHLM 89


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 142  LTSCTLITHIIIMEDKASLKELDQWIQQLNE 234
            L  C L TH    ++KASL  +   ++ LN+
Sbjct: 1116 LFKCMLCTHQKAGDEKASLINIADSLEMLNK 1146


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 142  LTSCTLITHIIIMEDKASLKELDQWIQQLNE 234
            L  C L TH    ++KASL  +   ++ LN+
Sbjct: 1116 LFKCMLCTHQKAGDEKASLINIADSLEMLNK 1146


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 142  LTSCTLITHIIIMEDKASLKELDQWIQQLNE 234
            L  C L TH    ++KASL  +   ++ LN+
Sbjct: 1116 LFKCMLCTHQKAGDEKASLINIADSLEMLNK 1146


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 142  LTSCTLITHIIIMEDKASLKELDQWIQQLNE 234
            L  C L TH    ++KASL  +   ++ LN+
Sbjct: 1116 LFKCMLCTHQKAGDEKASLINIADSLEMLNK 1146


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 181 EDKASLKELDQWIQQLNECKQLTENQVKTLCDK 279
           ED+ ++K  +  ++++ +  +LTEN V  L +K
Sbjct: 20  EDQYTIKYDNVNLKEILQSDRLTENYVNCLLEK 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,623
Number of Sequences: 336
Number of extensions: 2093
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)