Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B04
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 182 3e-47
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 29 0.60
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 28 0.79
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 1.0
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 1.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 2.2
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.2
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.2
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 25 7.3
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 7.3
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 9.7
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 9.7
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 182 bits (443), Expect = 3e-47
Identities = 86/110 (78%), Positives = 100/110 (90%)
Frame = +2
Query: 137 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 316
+K Q S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8 QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67
Query: 317 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIA 466
TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGV VEVTIA
Sbjct: 68 TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.60
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 254 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 406
K+ +KGP +P K+ T ++P S + + F+ H R+I L+S + +
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 28.3 bits (60), Expect = 0.79
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +2
Query: 335 SKTWDRFQMRIHKRVIDLHSPSEI--VKQITSI-NIEPGVXVEVTIADA*AEPPIKYF*K 505
+++WDRF + KR + P++I K+ T +P +++ I +YF K
Sbjct: 230 NESWDRFLPQFKKRNVARRKPAKIRETKEYTPFPPAQPPSKLDLEIESG------EYFLK 283
Query: 506 KKXXXKKKKKKKK 544
K+ +KK+ +KK
Sbjct: 284 KEEKERKKRAEKK 296
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 119 VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 268
+S IEKP+A SPIH + +R L+ V GA++ + VK
Sbjct: 891 LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 110 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 208
A V + D+EKPQ +V+ R+ L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 23.4 bits (48), Expect(2) = 2.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 548 YXFFFFFFF 522
Y FFFFFFF
Sbjct: 76 YWFFFFFFF 84
Score = 21.8 bits (44), Expect(2) = 2.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 542 FFFFFFFXXXFFFF 501
FF FFF+ F FF
Sbjct: 107 FFCFFFYFSLFSFF 120
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 316 NSLW*RFKDLGSFSDENPQESDRPTL 393
N+ W RFK+ G + DE+ E + P+L
Sbjct: 35 NNEW-RFKNAGEYFDEDNNEEEYPSL 59
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 359 MRIHKRVIDLHSPSEIVKQITSINIEPGV 445
+R+H+R I L + S+ ++ + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 390 CRSITLLWILI*KRSQVFEPSPQ 322
C + L W+ KRSQ PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -3
Query: 548 YXFFFFFFFXXXFFFFKNILLAAL--PTRRRWSPQPXHR 438
Y +F+ FF F F + L+ + RW P H+
Sbjct: 146 YGYFYLFFSIALFLLFSDFLIYWIHRALHHRWLYAPLHK 184
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 311 RKTPCGEGSKTWDRFQM 361
R +P GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 265 KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDENPQESD 381
K P+ +ANQ P + N+ W + G FS+ N D
Sbjct: 916 KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,501
Number of Sequences: 5004
Number of extensions: 45113
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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