Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B04
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   4e-41
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            31   0.47 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.4  
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      29   2.5  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   5.8  
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  164 bits (399), Expect = 4e-41
 Identities = 78/95 (82%), Positives = 87/95 (91%), Gaps = 2/95 (2%)
 Frame = +2

Query: 194 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 367
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 368 HKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
           HKR+IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 199 CALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
           C  A  GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 414 CLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 128 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 229
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 479 EPPIKYF*KKKXXXKKKKKKKK 544
           +PP K   KKK   KKKKKKKK
Sbjct: 145 QPPTKKKKKKKKKKKKKKKKKK 166


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -1

Query: 493 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHDFRGRV*VDHSLVDSHLK 353
           FY  L L V D    L  G+D    DLF + R    VD+SLV   +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 268  GPSPHANQDPAYHHP 312
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = +1

Query: 163 YPPHQDHSYFTQCALAR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
           Y P   +SY   CA  +   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 512 FFFFKNILLAALPTRRRWSPQP 447
           F   +N+++  LPT +RW P P
Sbjct: 176 FLSKRNVVIQRLPTSQRWQPYP 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,649,343
Number of Sequences: 59808
Number of extensions: 370539
Number of successful extensions: 1185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)