Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B04
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 174 4e-44
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 174 4e-44
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 172 1e-43
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 172 1e-43
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 56 2e-08
At1g20530.1 68414.m02558 hypothetical protein 29 1.5
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 28 4.7
At3g06960.2 68416.m00827 expressed protein 28 4.7
At3g06960.1 68416.m00826 expressed protein 28 4.7
At3g18310.1 68416.m02330 expressed protein 27 8.3
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 174 bits (423), Expect = 4e-44
Identities = 77/109 (70%), Positives = 96/109 (88%)
Frame = +2
Query: 146 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 325
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 326 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGV VEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 174 bits (423), Expect = 4e-44
Identities = 77/109 (70%), Positives = 96/109 (88%)
Frame = +2
Query: 146 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 325
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 326 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGV VEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 172 bits (418), Expect = 1e-43
Identities = 76/103 (73%), Positives = 93/103 (90%)
Frame = +2
Query: 164 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 343
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 344 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
WDRF++R+HKRVIDL S ++VKQITSI IEPGV VEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 172 bits (418), Expect = 1e-43
Identities = 76/103 (73%), Positives = 93/103 (90%)
Frame = +2
Query: 164 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 343
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 344 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
WDRF++R+HKRVIDL S ++VKQITSI IEPGV VEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Frame = +2
Query: 107 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
A+ V S I +++P +IRI L S V +E C +++ A+ + GPV +P
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132
Query: 287 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPGVXVEVTI 463
TK K+P + F++R H+R+ID L+ ++ + + +++ GV VEV +
Sbjct: 133 TKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 386 GRSLSCGFSSENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVSW 243
G +C S + P SLNL+H FY Y + P ++ +W
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFYSRRYESGTITPPPPPPAPSNYAW 153
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 398 RESVGRSLSCGFSSENDPRSLNLH 327
+E +G SLS GFS ++P +NL+
Sbjct: 5 KEDLGLSLSLGFSQNHNPLQMNLN 28
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 174 MRWIGETSAWGFSMSLPDT 118
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 174 MRWIGETSAWGFSMSLPDT 118
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g18310.1 68416.m02330 expressed protein
Length = 873
Score = 27.1 bits (57), Expect = 8.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 238 WSQETEAACKGPSPHANQDPA 300
W+ +++ C GPSP +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,683,836
Number of Sequences: 28952
Number of extensions: 254590
Number of successful extensions: 662
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -