Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B02
(561 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 132 7e-30
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46... 127 2e-28
UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotei... 107 2e-22
UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotei... 92 7e-18
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 83 6e-15
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 81 2e-14
UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putati... 81 2e-14
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 78 1e-13
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ... 78 2e-13
UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus ory... 76 7e-13
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 73 3e-12
UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces cere... 70 3e-11
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ... 67 2e-10
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 66 7e-10
UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa g... 65 1e-09
UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1; ... 62 9e-09
UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein NCU019... 62 1e-08
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 61 2e-08
UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G, puta... 61 2e-08
UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole ge... 60 3e-08
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 60 5e-08
UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;... 58 2e-07
UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm... 57 2e-07
UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putati... 57 3e-07
UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein, pu... 57 3e-07
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 56 7e-07
UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E hom... 54 3e-06
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 53 4e-06
UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein, pu... 53 5e-06
UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis ... 52 7e-06
UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 smal... 52 9e-06
UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm... 52 9e-06
UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole gen... 51 2e-05
UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E, puta... 51 2e-05
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 51 2e-05
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog... 50 3e-05
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 50 5e-05
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 49 6e-05
UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm... 49 9e-05
UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm... 47 3e-04
UniRef50_Q6DBW5 Cluster: Zgc:101136; n=6; Euteleostomi|Rep: Zgc:... 46 6e-04
UniRef50_Q1HQ51 Cluster: LSM1-like protein; n=3; Endopterygota|R... 46 6e-04
UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 46 6e-04
UniRef50_A1DH91 Cluster: Small nuclear ribonucleoprotein (LSM1),... 46 8e-04
UniRef50_P87173 Cluster: Uncharacterized protein C3D6.08c; n=1; ... 46 8e-04
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 46 8e-04
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 46 8e-04
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 46 8e-04
UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of s... 45 0.001
UniRef50_O15116 Cluster: U6 snRNA-associated Sm-like protein LSm... 45 0.001
UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza sat... 44 0.002
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 44 0.002
UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2; ... 44 0.002
UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6; Trypanoso... 44 0.002
UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus lu... 44 0.003
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 44 0.003
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 44 0.003
UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;... 43 0.004
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 43 0.006
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 43 0.006
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 43 0.006
UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -... 42 0.007
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 42 0.007
UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;... 42 0.010
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 42 0.010
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 42 0.013
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 41 0.017
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 41 0.017
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 41 0.017
UniRef50_Q4V6D7 Cluster: IP05148p; n=2; Drosophila melanogaster|... 41 0.023
UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;... 41 0.023
UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm... 41 0.023
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 40 0.030
UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1; ... 40 0.030
UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.030
UniRef50_Q5CQ90 Cluster: Small nuclear ribonucleoprotein U6; n=1... 40 0.040
UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putati... 40 0.040
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 40 0.040
UniRef50_A1CE19 Cluster: LSM domain protein; n=3; Trichocomaceae... 40 0.053
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 40 0.053
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 40 0.053
UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142, w... 39 0.069
UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F, puta... 39 0.092
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 39 0.092
UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces cere... 39 0.092
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.092
UniRef50_A3LX11 Cluster: Predicted protein; n=3; Saccharomycetac... 39 0.092
UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 39 0.092
UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 39 0.092
UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotei... 39 0.092
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 38 0.12
UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotei... 38 0.12
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 38 0.12
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 38 0.12
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 38 0.12
UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotei... 38 0.12
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 38 0.16
UniRef50_A6R7U2 Cluster: Predicted protein; n=2; Eurotiomycetida... 38 0.16
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 38 0.16
UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;... 38 0.16
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.21
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati... 38 0.21
UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus ful... 38 0.21
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 38 0.21
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S... 37 0.28
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 37 0.28
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 37 0.28
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 37 0.28
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.28
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.28
UniRef50_Q98RT8 Cluster: Small nucleolar ribonucleoprotein G; n=... 37 0.37
UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F, puta... 37 0.37
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 37 0.37
UniRef50_A7TII8 Cluster: Putative uncharacterized protein; n=1; ... 37 0.37
UniRef50_Q4JAY5 Cluster: Conserved Archaeal protein; n=4; Sulfol... 36 0.49
UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella... 36 0.65
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 36 0.65
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A... 36 0.65
UniRef50_UPI000049972A Cluster: hypothetical protein 54.t00001; ... 36 0.85
UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 36 0.85
UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lambl... 35 1.1
UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 35 1.1
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;... 35 1.1
UniRef50_Q8SRU9 Cluster: U6 snRNA-ASSOCIATED SMALL RIBONUCLEOPRO... 35 1.5
UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3; ... 35 1.5
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 35 1.5
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E... 35 1.5
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 34 2.0
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 34 2.0
UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1; ... 34 2.0
UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf prot... 34 2.6
UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like prot... 34 2.6
UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F, puta... 34 2.6
UniRef50_Q4P8W1 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T... 34 2.6
UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20... 34 2.6
UniRef50_O22305 Cluster: Peptide transporter; n=1; Lotus japonic... 33 3.4
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 33 3.4
UniRef50_A2DLB2 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 33 3.4
UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 33 3.4
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 33 3.4
UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 33 3.4
UniRef50_Q26BV4 Cluster: Putative uncharacterized protein; n=2; ... 33 4.6
UniRef50_Q6ICW6 Cluster: At5g55560; n=9; Magnoliophyta|Rep: At5g... 33 4.6
UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiell... 33 4.6
UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 33 4.6
UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN; ... 33 4.6
UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1; ... 33 4.6
UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear ri... 33 4.6
UniRef50_Q9LMB5 Cluster: F14D16.28; n=6; core eudicotyledons|Rep... 33 6.0
UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 6.0
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 33 6.0
UniRef50_Q6FJA6 Cluster: Similar to sp|P47093 Saccharomyces cere... 33 6.0
UniRef50_Q6CFJ1 Cluster: Similar to sp|O95777 Homo sapiens U6 sn... 33 6.0
UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_Q18CQ7 Cluster: Putative sigma-54-dependent transcripti... 32 8.0
UniRef50_Q55A45 Cluster: Putative small nuclear ribonucleopartic... 32 8.0
UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p... 32 8.0
UniRef50_Q75BR7 Cluster: ACR204Cp; n=2; Saccharomycetales|Rep: A... 32 8.0
UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1; ... 32 8.0
UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4; ... 32 8.0
UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Re... 32 8.0
UniRef50_Q8ZVU2 Cluster: Small nuclear ribonucleoprotein homolog... 32 8.0
UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;... 32 8.0
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 132 bits (318), Expect = 7e-30
Identities = 55/76 (72%), Positives = 71/76 (93%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
+SKAHPPE+KK+MDK++ +KLN GRAVTG+LRGFDPFMN+VLD++ EECKD +NN+GMV
Sbjct: 1 MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMV 60
Query: 318 VIRGNSIIMLESLDRL 365
VIRGNSI+M+E+LDR+
Sbjct: 61 VIRGNSIVMVEALDRV 76
>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
sapiens (Human)
Length = 76
Score = 127 bits (307), Expect = 2e-28
Identities = 58/76 (76%), Positives = 67/76 (88%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
+SKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE E GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 318 VIRGNSIIMLESLDRL 365
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotein
G; n=16; Bilateria|Rep: Probable small nuclear
ribonucleoprotein G - Caenorhabditis elegans
Length = 77
Score = 107 bits (257), Expect = 2e-22
Identities = 45/76 (59%), Positives = 62/76 (81%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
+SK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+ E KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 318 VIRGNSIIMLESLDRL 365
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotein
G; n=7; Ascomycota|Rep: Probable small nuclear
ribonucleoprotein G - Schizosaccharomyces pombe (Fission
yeast)
Length = 77
Score = 92.3 bits (219), Expect = 7e-18
Identities = 39/76 (51%), Positives = 61/76 (80%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
+SKA P+LKK++D+++ ++LN R V GVLRG+D F+N+VL++S EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 318 VIRGNSIIMLESLDRL 365
IRGNS+IM+E+LD++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 82.6 bits (195), Expect = 6e-15
Identities = 36/78 (46%), Positives = 53/78 (67%)
Frame = +3
Query: 132 LQLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVG 311
+ K P+L K +DKKL+IKLN R V G+LRGFD FMN+ L ++ E ++ +G
Sbjct: 1 MTFGKQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIG 60
Query: 312 MVVIRGNSIIMLESLDRL 365
MV+IRGNSI+++E L+ +
Sbjct: 61 MVIIRGNSILLMEPLESM 78
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 81.0 bits (191), Expect = 2e-14
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +3
Query: 141 SKAHPPELKKFMD-KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
+ PP LK+ KL IKLNA R V G LRGFD FMNLV+D + E +N++GMV
Sbjct: 18 ASGQPPALKQVHGTSKLQIKLNANRVVVGTLRGFDQFMNLVIDNTM-EVNGNDKNDIGMV 76
Query: 318 VIRGNSIIMLESLDRLXXT 374
VIRGNS++M+E+L+ + T
Sbjct: 77 VIRGNSVVMIEALEPVART 95
>UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putative;
n=8; Eukaryota|Rep: Small nuclear ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 83
Score = 80.6 bits (190), Expect = 2e-14
Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Frame = +3
Query: 129 TLQLSKAHPP-ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNN 305
TL + KA P + +KFM+K+L I LN R V G+LRG+D FMNLVLD + E KD ++ +
Sbjct: 2 TLTVGKAGPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKD-EQID 60
Query: 306 VGMVVIRGNSIIMLESLDRL 365
+G+VVIRGNSI E LD++
Sbjct: 61 IGVVVIRGNSISYWECLDKV 80
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 78.2 bits (184), Expect = 1e-13
Identities = 33/64 (51%), Positives = 51/64 (79%)
Frame = +3
Query: 168 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIML 347
++MDKKL ++LN R+VTG+LRGFD F+NLVLD+S + ++ +GMVV+RGNS++ +
Sbjct: 29 RYMDKKLRLRLNGNRSVTGILRGFDQFLNLVLDDSTNDTTT-EKTPMGMVVVRGNSVVSM 87
Query: 348 ESLD 359
E+L+
Sbjct: 88 EALE 91
>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins; n=1;
Aspergillus niger|Rep: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins -
Aspergillus niger
Length = 105
Score = 77.8 bits (183), Expect = 2e-13
Identities = 33/70 (47%), Positives = 54/70 (77%)
Frame = +3
Query: 141 SKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVV 320
++A+ +++M+K++ +LN R V G+LRG+D FMN+VLDE+ EE + G++ +GM+V
Sbjct: 12 TEANIAVFQQYMEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQGGEKVAIGMIV 71
Query: 321 IRGNSIIMLE 350
IRGNS++MLE
Sbjct: 72 IRGNSVVMLE 81
>UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 75.8 bits (178), Expect = 7e-13
Identities = 33/59 (55%), Positives = 47/59 (79%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIMLE 350
M+K++ +LN R V G+LRG+D FMN+VLDE+ EE + G++ +GMVVIRGNS++MLE
Sbjct: 1 MEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQGGEKVAIGMVVIRGNSVVMLE 59
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 73.3 bits (172), Expect = 3e-12
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 10/87 (11%)
Frame = +3
Query: 135 QLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC---------- 284
+++K PELK+F+DK++++ + GR + G LRGFD F+NLV+DE+ E+
Sbjct: 47 KMAKVSQPELKRFLDKRIAVNIQGGRKIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVW 106
Query: 285 KDGQRNNVGMVVIRGNSIIMLESLDRL 365
+DG R G VV+RGNS+ LE+L+ +
Sbjct: 107 QDGDR--CGTVVVRGNSVTSLEALENV 131
>UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces
cerevisiae YFL017wa SNP2 snRNP G protein; n=1;
Kluyveromyces lactis|Rep: Similar to sp|P40204
Saccharomyces cerevisiae YFL017wa SNP2 snRNP G protein -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 71
Score = 70.1 bits (164), Expect = 3e-11
Identities = 31/67 (46%), Positives = 46/67 (68%)
Frame = +3
Query: 165 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIM 344
K++MDKKL ++LN R + G+LRG+D F+NLVLD + ++G+ V+RGNSI+
Sbjct: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
Query: 345 LESLDRL 365
+E LD L
Sbjct: 65 IEPLDSL 71
>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
Length = 81
Score = 67.3 bits (157), Expect = 2e-10
Identities = 30/75 (40%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECK-DGQRN-NVGMVVIRG 329
PELK +++K++ +K++ R++ GVL G+D +MNLVLDE+ + D ++ +GM++I G
Sbjct: 6 PELKHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKHIPIGMIMILG 65
Query: 330 NSIIMLESLDRLXXT 374
NSI+ +E++D + T
Sbjct: 66 NSILSVETIDPVHTT 80
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 65.7 bits (153), Expect = 7e-10
Identities = 28/67 (41%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ-RNNVGMVVIRGNSI 338
L +F+DK + +K GR TG+L+G+D MNLV+D+ EE +DG+ ++G+VV+RG +I
Sbjct: 29 LAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNI 88
Query: 339 IMLESLD 359
+++ D
Sbjct: 89 VLVSPTD 95
>UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa
group|Rep: Predicted protein - Ajellomyces capsulatus
NAm1
Length = 171
Score = 64.9 bits (151), Expect = 1e-09
Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRN----NVGMVVIR 326
+L K+M+K++ +K N GR VTG L+G+D MNLVLD+ E +D + N ++G++V R
Sbjct: 86 DLTKYMEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQTTRSLGLIVAR 145
Query: 327 GNSIIMLESLD 359
G ++++ +D
Sbjct: 146 GTLLVLISPVD 156
>UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 126
Score = 62.1 bits (144), Expect = 9e-09
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD---------GQRNNVG 311
+L K+ D K+ +KL GR VTGVL+G+DP M LVLDE+ E +D Q ++G
Sbjct: 40 DLAKYKDTKIRVKLMGGRLVTGVLKGYDPLMTLVLDETVEYLRDLEDSSIILKDQTRDLG 99
Query: 312 MVVIRGNSIIMLESLD 359
+ VIRG ++ L +D
Sbjct: 100 LTVIRGTVLLSLSPVD 115
>UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein
NCU01930.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU01930.1 - Neurospora crassa
Length = 132
Score = 61.7 bits (143), Expect = 1e-08
Identities = 28/67 (41%), Positives = 45/67 (67%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSI 338
+LKK+MD+++++K N GR VTG L+G+D MNLVLD+ E + G+VV RG +
Sbjct: 57 DLKKYMDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVR-------GLVVARGTLL 109
Query: 339 IMLESLD 359
+++ +D
Sbjct: 110 VVISPVD 116
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 60.9 bits (141), Expect = 2e-08
Identities = 28/77 (36%), Positives = 50/77 (64%), Gaps = 8/77 (10%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDG--------QRNNVGM 314
+L +F+D+ + +KL+ GR VTG L+G+D +NLVLDE+ E +D + +G+
Sbjct: 9 DLARFIDRGVRVKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISDETRALGL 68
Query: 315 VVIRGNSIIMLESLDRL 365
+V RG S++++ +LD +
Sbjct: 69 LVCRGTSVMVVSALDSM 85
>UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G,
putative; n=2; Piroplasmida|Rep: Small nuclear
ribonucleoprotein G, putative - Theileria parva
Length = 86
Score = 60.9 bits (141), Expect = 2e-08
Identities = 30/58 (51%), Positives = 41/58 (70%)
Frame = +3
Query: 192 IKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIMLESLDRL 365
+ LN R V GVLRG+D FMN+VLD + E + Q ++G+VV+RGNSI+ E LDR+
Sbjct: 27 VHLNGSRHVVGVLRGYDTFMNIVLDNALEVVGEDQ-VDLGVVVVRGNSILYWECLDRV 83
>UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole
genome shotgun sequence; n=8; Eukaryota|Rep: Chromosome
chr13 scaffold_210, whole genome shotgun sequence -
Vitis vinifera (Grape)
Length = 113
Score = 60.5 bits (140), Expect = 3e-08
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 8/75 (10%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD--------GQRNNVGM 314
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+ E +D Q +G+
Sbjct: 24 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQTRRLGL 83
Query: 315 VVIRGNSIIMLESLD 359
+V RG +++++ D
Sbjct: 84 IVCRGTAVMLVSPTD 98
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 59.7 bits (138), Expect = 5e-08
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
Frame = +3
Query: 135 QLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE-------ECKDG 293
Q + + +L K+ K+L IKLNA R + G + GFD FMNLVLD E E KD
Sbjct: 9 QHKQGYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKELIPGQGAENKDN 68
Query: 294 ----------QRNNVGMVVIRGNSIIMLESLDRL 365
Q ++G ++RGNSIIM E LD++
Sbjct: 69 LYPGFSNVTDQLVDIGQAIVRGNSIIMWECLDKV 102
>UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;
Eukaryota|Rep: U6 snRNP-associated protein Lsm7 -
Schizosaccharomyces pombe (Fission yeast)
Length = 113
Score = 57.6 bits (133), Expect = 2e-07
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD-------GQRNNVGMV 317
+L ++ D+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 318 VIRGNSIIMLESLD 359
V+RG +++++ +D
Sbjct: 87 VVRGTTLVLIAPMD 100
>UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=26; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm7 - Homo sapiens (Human)
Length = 103
Score = 57.2 bits (132), Expect = 2e-07
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD--------GQRNNVGM 314
+L K++DK + +K GR +G+L+GFDP +NLVLD + E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 315 VVIRGNSIIML 347
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putative;
n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 81
Score = 56.8 bits (131), Expect = 3e-07
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDG-----QRNNVGMVV 320
P L FM+K++ +K+ GR+++GVLRG D M++VL ++ +E ++ R +G V
Sbjct: 8 PNLNHFMEKRIVVKIQGGRSISGVLRGVDEHMSIVLHDAMDETRNAAVSEEARLALGTTV 67
Query: 321 IRGNSIIMLESLD 359
IRG++I+ + S D
Sbjct: 68 IRGSAIVEIVSAD 80
>UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein,
putative (Small nuclear ribonucleoprotein (LSM7),
putative); n=2; Pezizomycotina|Rep: U6 snrna-associated
sm-like protein, putative (Small nuclear
ribonucleoprotein (LSM7), putative) - Aspergillus
fumigatus (Sartorya fumigata)
Length = 134
Score = 56.8 bits (131), Expect = 3e-07
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSI 338
+L K+MDK++ +K N GR V+G+L+G+D MNLVLD+ E + N++ + NS
Sbjct: 54 DLSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRGKSLNDITKLDEVSNSA 113
Query: 339 IML 347
I +
Sbjct: 114 IQM 116
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 55.6 bits (128), Expect = 7e-07
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 8/70 (11%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD--------GQRNNVGMV 317
L K ++K++ +K + GR V GVLRG D NLVLD++ E KD G++ N+G++
Sbjct: 17 LNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTGEKRNLGLL 76
Query: 318 VIRGNSIIML 347
V RG S+ ++
Sbjct: 77 VARGTSVTVV 86
>UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E
homolog; n=2; Bigelowiella natans|Rep: Small nucleolar
ribonucleoprotein E homolog - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 71
Score = 53.6 bits (123), Expect = 3e-06
Identities = 26/71 (36%), Positives = 45/71 (63%)
Frame = +3
Query: 144 KAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVI 323
K + P+LK FM++++ I+L + G LRGFD F+N+VL++S + N ++++
Sbjct: 4 KINIPDLKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKSS---YSKESNYFDILIV 60
Query: 324 RGNSIIMLESL 356
RGNSI+ + L
Sbjct: 61 RGNSIMSVSKL 71
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 53.2 bits (122), Expect = 4e-06
Identities = 24/52 (46%), Positives = 37/52 (71%)
Frame = +3
Query: 192 IKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIML 347
I L GR + GVL+G+D MNLVLD++ EE GQ ++G ++IRG+++I +
Sbjct: 25 ISLKGGREIKGVLQGYDVHMNLVLDKA-EEIVQGQAQSIGTLIIRGDNVIYI 75
>UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein,
putative; n=4; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein, putative - Plasmodium berghei
Length = 108
Score = 52.8 bits (121), Expect = 5e-06
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD--------GQRNNVGM 314
++KKFM++K+ +K + GR V G L G D NLVLD++ E +D + N+G+
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGNLIGHDAIFNLVLDKTEEFIRDPNDSYVITEKSRNIGL 79
Query: 315 VVIRGNSIIML 347
+V RG S+ ++
Sbjct: 80 IVARGTSVALI 90
>UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 81
Score = 52.4 bits (120), Expect = 7e-06
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +3
Query: 129 TLQLSKAHPP--ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-DESXEECKDGQR 299
++Q+++A PP ELK + KK+ I N R V+G+L GFD FMNL + D + D
Sbjct: 2 SVQMTQAQPPYPELKGHLQKKVKIMSNKDREVSGILTGFDHFMNLTIRDAQIKTPYDKAP 61
Query: 300 NNVGMVVIRGNSIIMLESLD 359
VIRG I+ +E+L+
Sbjct: 62 VFCNSCVIRGTMILSVETLN 81
>UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae); n=1; Macaca
mulatta|Rep: PREDICTED: LSM7 homolog, U6 small nuclear
RNA associated (S. cerevisiae) - Macaca mulatta
Length = 123
Score = 52.0 bits (119), Expect = 9e-06
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD 290
+L K++DK + +K GR +G+L+GFDP +NLVLD + E +D
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRD 57
>UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=6; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm7 - Saccharomyces cerevisiae (Baker's yeast)
Length = 115
Score = 52.0 bits (119), Expect = 9e-06
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECK--DGQRN---------N 305
+L K+ D K+ +KL G+ V GVL+G+D MNLVLD++ E D + N
Sbjct: 29 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARK 88
Query: 306 VGMVVIRGNSIIMLESLD 359
+G+ VIRG ++ L S +
Sbjct: 89 LGLTVIRGTILVSLSSAE 106
>UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 73
Score = 51.6 bits (118), Expect = 1e-05
Identities = 27/62 (43%), Positives = 37/62 (59%)
Frame = +3
Query: 93 ITLIPYYNILKSTLQLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES 272
+ L YY L +++S L KF +K++ +KL GR V G+LRGFD NLVLDE+
Sbjct: 3 VPLAKYY--LSFNIEMSSKSILGLNKFNNKEIKVKLCGGREVIGILRGFDAVTNLVLDET 60
Query: 273 XE 278
E
Sbjct: 61 VE 62
>UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 242
Score = 51.2 bits (117), Expect = 2e-05
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ---RNNVGMVVIRGN 332
L ++DKKL + L GR + GVLR FD F N VL+ + E G +G+ VIRG
Sbjct: 15 LASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERAIVGDIYCDIPLGLYVIRGE 74
Query: 333 SIIMLESLD 359
++++L LD
Sbjct: 75 NVVLLGELD 83
Score = 44.0 bits (99), Expect = 0.002
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 180 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ---RNNVGMVVIRGNSIIMLE 350
+KL + L GR + GVLR FD F N VL+ + E G +G+ VIRG ++++L
Sbjct: 135 EKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERAIVGDIYCDIPLGLYVIRGENVVLLG 194
Query: 351 SLD 359
LD
Sbjct: 195 ELD 197
>UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E,
putative; n=1; Tetrahymena thermophila SB210|Rep: Small
nuclear ribonucleoprotein E, putative - Tetrahymena
thermophila SB210
Length = 140
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/70 (31%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Frame = +3
Query: 171 FMDKKLSIKL----NAGRAVTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNS 335
F+ K++ +++ N + G + GFD +MN+VLDE+ E +CK Q+ +G ++++G +
Sbjct: 19 FLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDCKTNQKREIGRILLKGEN 78
Query: 336 IIMLESLDRL 365
I ++ +L++L
Sbjct: 79 ITLIRNLEQL 88
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/62 (35%), Positives = 40/62 (64%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
L + +++ + IKL + + G L GFD MNL+LD S E +G+ +G +V+RG++++
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAKGLGSIVVRGDNVV 69
Query: 342 ML 347
M+
Sbjct: 70 MI 71
>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 85
Score = 50.4 bits (115), Expect = 3e-05
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ-RNNVGMVVIRGNSI 338
L K ++K++ +L G AV GVL +D MNLVL+++ E K G+ + G +VIRG+ +
Sbjct: 16 LTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVIRGSQV 75
Query: 339 IMLES 353
I + +
Sbjct: 76 IYVST 80
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 49.6 bits (113), Expect = 5e-05
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDG---QRNNVGMVVIRGNSIIM 344
+DKKL + L GR G++R FD F N+VL ++ E G N+G+ IRG+++++
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVI 68
Query: 345 LESLD 359
L +D
Sbjct: 69 LGEID 73
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 49.2 bits (112), Expect = 6e-05
Identities = 22/62 (35%), Positives = 42/62 (67%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
L++ ++K++S+ L R + G L G+D +MN+VLD+ E ++ R +G VVIRG++++
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSENVSR-KLGTVVIRGSNVV 66
Query: 342 ML 347
+
Sbjct: 67 RI 68
>UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=33; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Schizosaccharomyces pombe (Fission yeast)
Length = 75
Score = 48.8 bits (111), Expect = 9e-05
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV-GMVVIRGNSI 338
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 339 IMLESLD 359
+ + +LD
Sbjct: 68 LYVSALD 74
>UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 148
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR-NNV--GMVVIRGNSIIM 344
+DKK+ + L G+ + GVLR +D F NLVL ++ E G R +V G+ ++RG ++++
Sbjct: 22 VDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVFVGNRYGDVARGIFLVRGENVVL 81
Query: 345 LESLD 359
+ +D
Sbjct: 82 MGEID 86
>UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=22; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Homo sapiens (Human)
Length = 80
Score = 47.2 bits (107), Expect = 3e-04
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 132 LQLSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV 308
+ L K P + LK+ + + + +KLN+G GVL D +MN+ L+++ E +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 309 GMVVIRGNSIIMLESLDR 362
G IRGN+++ + + R
Sbjct: 61 GDAFIRGNNVLYISTQKR 78
>UniRef50_Q6DBW5 Cluster: Zgc:101136; n=6; Euteleostomi|Rep:
Zgc:101136 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 133
Score = 46.0 bits (104), Expect = 6e-04
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR-NNV--GMVVIRGNSIIM 344
+DKK + L GR + G+LR D F NLVL ++ E G++ ++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIPRGIFVVRGENVVL 73
Query: 345 LESLD 359
L +D
Sbjct: 74 LGEVD 78
>UniRef50_Q1HQ51 Cluster: LSM1-like protein; n=3; Endopterygota|Rep:
LSM1-like protein - Bombyx mori (Silk moth)
Length = 138
Score = 46.0 bits (104), Expect = 6e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNN---VGMVVIRGNSIIM 344
+DKKL + L GR + G LR D F NLVL ++ E G+ G+ ++RG ++++
Sbjct: 18 LDKKLMVLLRDGRTLIGYLRCVDQFANLVLHKTIERIHVGKEYGDIPRGIFIVRGENVVL 77
Query: 345 LESLDR 362
L +D+
Sbjct: 78 LGEIDK 83
>UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 86
Score = 46.0 bits (104), Expect = 6e-04
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV----GMVVIRG 329
L ++K + +KL AGR ++G LR D MN+VLD++ E D + N V G V+IRG
Sbjct: 16 LGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEE--LDTRTNQVIVRYGKVLIRG 73
Query: 330 NSIIMLESLDRL 365
N ++ + + L
Sbjct: 74 NQVLYVSVRNEL 85
>UniRef50_A1DH91 Cluster: Small nuclear ribonucleoprotein (LSM1),
putative; n=11; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein (LSM1), putative - Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 177
Score = 45.6 bits (103), Expect = 8e-04
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRN---NVGMVVIRG 329
+L DKKL + L GR + GVLR +D F NLVL ++ E G G+ ++RG
Sbjct: 52 QLLDLTDKKLVLVLRDGRKLIGVLRSWDQFANLVLQDTIERLYAGNLYADIPRGIFLVRG 111
Query: 330 NSIIMLESLD 359
++++L +D
Sbjct: 112 ENVLLLGEID 121
>UniRef50_P87173 Cluster: Uncharacterized protein C3D6.08c; n=1;
Schizosaccharomyces pombe|Rep: Uncharacterized protein
C3D6.08c - Schizosaccharomyces pombe (Fission yeast)
Length = 140
Score = 45.6 bits (103), Expect = 8e-04
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC-KDGQRNNV--GMVVIRGN 332
L ++D+K+ + L G+ + G+LR FD F NL+L + E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 333 SIIMLESLD 359
++++L LD
Sbjct: 76 NVVLLGELD 84
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 45.6 bits (103), Expect = 8e-04
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ-RNNVGMVVIRGNSIIML 347
++ + IKL R GVL+ FD MNLVL+++ EE +DG+ +G V+IRG++I+ +
Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDA-EELEDGEVTRRLGTVLIRGDNIVYI 79
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 45.6 bits (103), Expect = 8e-04
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRN----NVGMVVIRG 329
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 330 NSIIMLESLD 359
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 45.6 bits (103), Expect = 8e-04
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV-----GMVVIRGNSI 338
+D+K+ + L GR + GVLR FD + NL+L + E + N G+ +IRG ++
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 109
Query: 339 IMLESLD 359
+ML +D
Sbjct: 110 VMLGEVD 116
>UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 78
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECK 287
+L + DK++ +K GR V GVL+GFD MNLVL++ E +
Sbjct: 34 DLNNYKDKQIRVKFIGGRQVIGVLKGFDQLMNLVLEDVKENIR 76
>UniRef50_O15116 Cluster: U6 snRNA-associated Sm-like protein LSm1;
n=23; Eumetazoa|Rep: U6 snRNA-associated Sm-like protein
LSm1 - Homo sapiens (Human)
Length = 133
Score = 44.8 bits (101), Expect = 0.001
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNN---VGMVVIRGNSIIM 344
+DKK + L GR + G LR D F NLVL ++ E G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 345 LESLD 359
L +D
Sbjct: 74 LGEID 78
>UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza
sativa|Rep: OSIGBa0140O07.9 protein - Oryza sativa
(Rice)
Length = 136
Score = 44.4 bits (100), Expect = 0.002
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRN---NVGMVVIRGN 332
L F+DKKL + L GR + G L FD F N+VL + E G+ +G+ VIRG
Sbjct: 16 LAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELYCDVPLGLYVIRGE 75
Query: 333 SIIMLESL 356
+++++ L
Sbjct: 76 NVVLIGEL 83
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
L+ F+D + ++L G+ + G L FD +NLVLD+ E +D + +G V+IRG+S+
Sbjct: 7 LRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSE-VRLGRVLIRGDSVT 65
Query: 342 ML 347
++
Sbjct: 66 LI 67
>UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE 278
P L+ +D+ +S+ N GR + G LRGFD N++LDES E
Sbjct: 6 PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6;
Trypanosomatidae|Rep: Lsm7p protein, putative -
Leishmania major
Length = 91
Score = 44.0 bits (99), Expect = 0.002
Identities = 23/66 (34%), Positives = 39/66 (59%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
L+K++D+K+ + G V GVL+GFD +NLVL ++ +D +G V+RG +
Sbjct: 18 LEKYLDRKIVVS-QKGHEVHGVLKGFDNNVNLVLADAELWHRDTHVRKIGACVVRGGPVN 76
Query: 342 MLESLD 359
++ S D
Sbjct: 77 LILSGD 82
>UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 126
Score = 43.6 bits (98), Expect = 0.003
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNN---VGMVVIRGNSIIM 344
+DK+L + L G + G LR FD F N+VL+ + E G+ + +G+ ++RG ++++
Sbjct: 17 LDKRLLVALRDGSNIIGTLRSFDQFANIVLESAVERIIVGKMFSDIPLGLYIVRGENVVL 76
Query: 345 L 347
+
Sbjct: 77 M 77
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
L+ + K++ +KL + G+LR FD +NL+L E EE DG G +V+RG +++
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLL-EDAEEIIDGNVYKRGTMVVRGENVL 74
Query: 342 ML 347
+
Sbjct: 75 FI 76
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 43.6 bits (98), Expect = 0.003
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC----KDGQRNNVGMVVIRG 329
L FM++++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 330 NSIIML 347
++ M+
Sbjct: 63 ENVAMV 68
>UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;
Guillardia theta|Rep: Small nuclear ribonucleoprotein F
- Guillardia theta (Cryptomonas phi)
Length = 73
Score = 43.2 bits (97), Expect = 0.004
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +3
Query: 177 DKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIML 347
+K + +KL G + TG+ G D +MN++LD E + +G+V+IR N+I+ +
Sbjct: 12 NKNVFVKLKWGSSYTGIFIGSDNYMNIILDSCSEVITEQNLGFLGLVLIRCNNILFI 68
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 42.7 bits (96), Expect = 0.006
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
L + + ++++L+ G G L+ D +MN+VLDE+ E Q N G V IRGN+
Sbjct: 21 LSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRGNN 78
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 42.7 bits (96), Expect = 0.006
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR-NNVGMVVIRGNSI 338
L + + + ++L GR G L G+D MNLVL ++ EE ++G+ VG VVIRG+++
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDA-EEIQNGEVVRKVGSVVIRGDTV 67
Query: 339 IML 347
+ +
Sbjct: 68 VFV 70
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 42.7 bits (96), Expect = 0.006
Identities = 16/59 (27%), Positives = 39/59 (66%)
Frame = +3
Query: 171 FMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIML 347
++D + +KL +G + GVL+ +D +N++L ++ EE + +G+ ++RG+S++++
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDA-EEIGETSIRRLGLTLVRGDSVVVI 73
>UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -
Homo sapiens (Human)
Length = 145
Score = 42.3 bits (95), Expect = 0.007
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Frame = +3
Query: 207 GRAVTGVLRGFDPFMNLVLDESXEECKD--------GQRNNVGMVVIRGNSIIML 347
GR +G+L+GFDP +NLVLD + E +D +G+VV RG S++++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 42.3 bits (95), Expect = 0.007
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 216 VTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIMLESL 356
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN G - Encephalitozoon cuniculi
Length = 78
Score = 41.9 bits (94), Expect = 0.010
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE 278
+ K+ P L + K++ +++ G + G+L G+D FMN+VL E E
Sbjct: 1 MGKSAVPNLASLLHKRIVVRIGGGHTLKGLLTGYDAFMNIVLSEVTE 47
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 41.9 bits (94), Expect = 0.010
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 PPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE---ECKDGQR---NNVG 311
P +L ++ +D+ + +KL R + G L+G+D N++L ++ E + +GQ N
Sbjct: 13 PLDLVRYQLDELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPEGQEPVTKNTD 72
Query: 312 MVVIRGNSIIMLESLD 359
MV +RG+S+I++ ++
Sbjct: 73 MVFVRGDSVILISPVN 88
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 41.5 bits (93), Expect = 0.013
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 216 VTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIMLESL 356
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 41.1 bits (92), Expect = 0.017
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +3
Query: 126 STLQLSKAHPPE--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEE--CKDG 293
ST++ S + P + K + K+ I + + +TG LRGFD +MN+VL++ + DG
Sbjct: 2 STIEASAVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADG 61
Query: 294 -QRNNVGMVVIRGNSIIML 347
+ + ++ GN++ ML
Sbjct: 62 VKTTELNDALVNGNNVAML 80
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 41.1 bits (92), Expect = 0.017
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDG----QRNNVGMVVIRG 329
L+ +++ +SI GR G L+GFD +N++LDES E ++ +G+ +IRG
Sbjct: 71 LESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHERVYSMNAGIEQVVLGLHIIRG 130
Query: 330 NSIIMLESLD 359
+++ ++ LD
Sbjct: 131 DNVAVIGQLD 140
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 41.1 bits (92), Expect = 0.017
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
LK + + + I + R +G+L G+D +MN+VL + E + V++RG+++I
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRGDNVI 73
Query: 342 ML 347
+
Sbjct: 74 FV 75
>UniRef50_Q4V6D7 Cluster: IP05148p; n=2; Drosophila
melanogaster|Rep: IP05148p - Drosophila melanogaster
(Fruit fly)
Length = 99
Score = 40.7 bits (91), Expect = 0.023
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR 299
+DKKL + L GR + G LR D F NLVL + E GQR
Sbjct: 34 VDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIPCGQR 75
>UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein lsm-1 - Caenorhabditis elegans
Length = 125
Score = 40.7 bits (91), Expect = 0.023
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEE-------CKDGQRNNVGMVVIRGN 332
+DKKL + L GR + G LR D F NL+L++ E C+ GQ G ++IRG
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73
Query: 333 SIIMLESLD 359
++ + +D
Sbjct: 74 NVELAGEID 82
>UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm6,
putative; n=1; Filobasidiella neoformans|Rep: U6
snRNA-associated sm-like protein lsm6, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 88
Score = 40.7 bits (91), Expect = 0.023
Identities = 17/68 (25%), Positives = 40/68 (58%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
L+ + K++ +++ +G TG+L D +MN+ L+++ E + + G +RGN+++
Sbjct: 21 LRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLRGNNVL 80
Query: 342 MLESLDRL 365
+ +L+ L
Sbjct: 81 YISALEDL 88
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 40.3 bits (90), Expect = 0.030
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
LK ++ ++S+ L ++TG+L FD MNL+L + EE ++VIRG+SII
Sbjct: 57 LKTSLEDRVSVLLQNNSSITGLLASFDEHMNLIL-INAEETGHSLNRFFPLLVIRGDSII 115
Query: 342 ML 347
+
Sbjct: 116 FV 117
>UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 107
Score = 40.3 bits (90), Expect = 0.030
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV----GMVVIRG 329
L+K + KK+ I G+ + G+L+G D +N +L + E + N G+ ++RG
Sbjct: 17 LEKLLFKKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKTIKHGLYLLRG 76
Query: 330 NSIIMLESLD 359
++I +L +D
Sbjct: 77 DNIAVLGEVD 86
>UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=27; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm5 - Homo sapiens (Human)
Length = 91
Score = 40.3 bits (90), Expect = 0.030
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Frame = +3
Query: 126 STLQLSKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXEECKDGQ 296
+T S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+
Sbjct: 5 ATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 64
Query: 297 R-NNVGMVVIRGNSIIML 347
R + +++ GN+I ML
Sbjct: 65 RITKLDQILLNGNNITML 82
>UniRef50_Q5CQ90 Cluster: Small nuclear ribonucleoprotein U6; n=1;
Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein U6 - Cryptosporidium parvum Iowa II
Length = 160
Score = 39.9 bits (89), Expect = 0.040
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNN---VGMVVIRGN 332
L++ +DK++ + L GR TG+ R FD + +L L+ S E + N G ++ RG+
Sbjct: 46 LEEDLDKEIYVVLRDGRQFTGIFRSFDQYGSLCLERSFEVFSNNDCYNEIYQGCMIFRGD 105
Query: 333 SIIMLESLDR 362
++++ +D+
Sbjct: 106 NLMLCGLIDQ 115
>UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putative;
n=2; Theileria|Rep: Small nuclear ribonucleoprotein,
putative - Theileria parva
Length = 91
Score = 39.9 bits (89), Expect = 0.040
Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 216 VTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIMLES 353
+ G +RGFD +MN+VLD + E K + +VG ++++G+ + ++ +
Sbjct: 41 IEGTIRGFDEYMNMVLDNATEVHVKKNVKKDVGRILLKGDCMTLISA 87
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 39.9 bits (89), Expect = 0.040
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = +3
Query: 135 QLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGM 314
QL K +L+ ++K++ I+ GR V G L FD +NLVLDE E QR +G+
Sbjct: 3 QLPKESIIKLQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVLDEVRE--LPSQR-ILGL 59
Query: 315 VVIRG 329
V+ RG
Sbjct: 60 VICRG 64
>UniRef50_A1CE19 Cluster: LSM domain protein; n=3;
Trichocomaceae|Rep: LSM domain protein - Aspergillus
clavatus
Length = 108
Score = 39.5 bits (88), Expect = 0.053
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
L + + +++KLN+G G L+ D +MN+ L++S E R + G IRGN+
Sbjct: 15 LSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIRGNN 72
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 39.5 bits (88), Expect = 0.053
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR--NNVGMVVIRGNS 335
LK+ ++ ++ +KL G G L D MNL+LD++ E +G R +G V+I+G+
Sbjct: 16 LKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRVLIKGSM 75
Query: 336 I 338
+
Sbjct: 76 V 76
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 39.5 bits (88), Expect = 0.053
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 135 QLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEE 281
++ AH L +D KL + GR G L FD MNLVL+E EE
Sbjct: 3 KIQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEE 51
>UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_142,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 95
Score = 39.1 bits (87), Expect = 0.069
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 201 NAGRAVTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIMLESLD 359
N + G L GFD ++NLVLD + E + K +G ++++G +I+++ +L+
Sbjct: 38 NDNLRIQGKLAGFDEYLNLVLDRAVEYDRKTKATKELGKILLKGENIVLVRTLE 91
>UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F,
putative, expressed; n=5; Oryza sativa|Rep: Small
nuclear ribonucleoprotein F, putative, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 86
Score = 38.7 bits (86), Expect = 0.092
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ-RNNVGMVVIRGN 332
P L K + +KL G G L D +MNL L + EE DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEILIRCN 68
Query: 333 SIIMLESL 356
+++ L +
Sbjct: 69 NVLYLRGV 76
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 38.7 bits (86), Expect = 0.092
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +3
Query: 231 RGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIML 347
+GFD +MNLVLDE+ E K R ++G ++++G++I ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
>UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like - Yarrowia lipolytica
(Candida lipolytica)
Length = 144
Score = 38.7 bits (86), Expect = 0.092
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEE 281
+D+K+ + L GR G+LR FD F NLVL ++ E+
Sbjct: 24 IDRKVVVTLRGGRKFFGILRSFDQFANLVLQDTYEK 59
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=2; Pezizomycotina|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 83
Score = 38.7 bits (86), Expect = 0.092
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
L + + +++KLN+G G L+ D +MN+ L+++ E ++ + G +RGN+++
Sbjct: 18 LGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGNNVM 77
Query: 342 ML 347
+
Sbjct: 78 YI 79
>UniRef50_A3LX11 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 92
Score = 38.7 bits (86), Expect = 0.092
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 138 LSKAHPPELK--KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD 290
++ A P L +F+ L + + GR VTG+L DPF NL+L EE +D
Sbjct: 1 MASASNPSLTPDQFIGSNLRVAIKDGRVVTGILTVIDPFGNLLLSNVIEESED 53
>UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 79
Score = 38.7 bits (86), Expect = 0.092
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 186 LSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIML 347
+ +K + GR G L D ++NL L+ES E + +G +VIRGN+I+ +
Sbjct: 22 VEMKEDEGRTFQGRLVAVDEYLNLHLEESIETSGKNKGRELGTLVIRGNNILSI 75
>UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 149
Score = 38.7 bits (86), Expect = 0.092
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 132 LQLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFD-PFMNLVLDESXEECKDGQRNNV 308
+ S+ EL +DKK+ + L GR G+L GFD P +N++L E D + N
Sbjct: 4 IDASRRLAAELAGLVDKKVKVILADGRFYEGILTGFDHPSLNILL----ENAVDNKGNKY 59
Query: 309 GMVVIRGNSI 338
V+I+G I
Sbjct: 60 PKVIIKGERI 69
>UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotein
F; n=13; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein F - Caenorhabditis elegans
Length = 85
Score = 38.7 bits (86), Expect = 0.092
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
P L K + KL G GVL D +MNL L + E + N+G ++IR N+
Sbjct: 11 PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70
Query: 336 IIMLESLD 359
++ + +D
Sbjct: 71 VLYVGGVD 78
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 38.3 bits (85), Expect = 0.12
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 201 NAGRAVTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIMLESLD 359
N + G L GFD ++NLVL ++ E K R +G ++++G +I ++ ++
Sbjct: 34 NTALRIEGTLSGFDQYINLVLTDTEEVYLKTNTRRKIGTILLKGENISVISKIE 87
>UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein E - Guillardia theta (Cryptomonas phi)
Length = 78
Score = 38.3 bits (85), Expect = 0.12
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 222 GVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIMLESL 356
G L GFD FMNLV++ + E+ ++G V+I+G+SI+ + S+
Sbjct: 32 GNLIGFDEFMNLVIENTTEKKDSLIVRDLGYVLIKGDSILTISSI 76
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 38.3 bits (85), Expect = 0.12
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 216 VTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIML 347
+ G + GFD +MNLVLD++ E K R ++G ++++G++I ++
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 38.3 bits (85), Expect = 0.12
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = +3
Query: 180 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDG------QRNNVGMVVIRGNSII 341
K + ++L +GR +TGVL+ +D +NLV E+ E ++ +R N ++RG+++I
Sbjct: 62 KPVLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEENGIEYTEERKN---FMLRGDNVI 118
Query: 342 MLES 353
M+ S
Sbjct: 119 MVVS 122
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 38.3 bits (85), Expect = 0.12
Identities = 15/52 (28%), Positives = 36/52 (69%), Gaps = 5/52 (9%)
Frame = +3
Query: 216 VTGVLRGFDPFMNLVLDESXE-----ECKDGQRNNVGMVVIRGNSIIMLESL 356
+ G +RGFD FMNLV+D++ E + + +R +G ++++G+++ +++++
Sbjct: 43 IEGKIRGFDEFMNLVVDDAVEVRMATKTDEEKRRPLGQILLKGDNVSLIQAV 94
>UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotein
F; n=7; Magnoliophyta|Rep: Probable small nuclear
ribonucleoprotein F - Arabidopsis thaliana (Mouse-ear
cress)
Length = 88
Score = 38.3 bits (85), Expect = 0.12
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ-RNNVGMVVIRGN 332
P L K + +KL G G L D +MNL L + EE DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNT-EEYIDGQLTGNLGEILIRCN 68
Query: 333 SIIMLESL 356
+++ + +
Sbjct: 69 NVLYVRGV 76
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 37.9 bits (84), Expect = 0.16
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Frame = +3
Query: 168 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC--KDG-----QRNNVGMVVIR 326
+++D ++ I L GR + G FD +N++L E E K G + +GM+++R
Sbjct: 9 QWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVR 68
Query: 327 GNSIIMLES 353
G++II L +
Sbjct: 69 GDNIISLSA 77
>UniRef50_A6R7U2 Cluster: Predicted protein; n=2;
Eurotiomycetidae|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 37.9 bits (84), Expect = 0.16
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 198 LNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIML 347
L + +G L GFD ++N+VL++ E G + + +++ GN+I ML
Sbjct: 43 LTSNSEFSGTLLGFDDYVNMVLEDVTEFDYTGSQTKLSKILLNGNNICML 92
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 37.9 bits (84), Expect = 0.16
Identities = 17/68 (25%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAG-RAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
+++K + ++ +++ + G L+ D +MNL L ++ E + + ++G VV+RGN+
Sbjct: 6 KVQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVRGEKVRSLGSVVLRGNN 65
Query: 336 IIMLESLD 359
II++ ++
Sbjct: 66 IILITPVE 73
>UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;
Fungi/Metazoa group|Rep: Small nuclear ribonucleoprotein
F - Drosophila melanogaster (Fruit fly)
Length = 88
Score = 37.9 bits (84), Expect = 0.16
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
P L K + +KL G+ G L D +MN+ L + E + N+G V+IR N+
Sbjct: 11 PFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNN 70
Query: 336 IIMLESLD 359
++ ++ ++
Sbjct: 71 VLYIKGME 78
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 37.5 bits (83), Expect = 0.21
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC--KDG--QRNNVGMVVI 323
P L++F++ + + GR GVL+GFD NLVL E D + +G+ ++
Sbjct: 3 PILEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLERVYHPDAPVEELELGIYLL 62
Query: 324 RGNSIIMLESLD 359
RG++I+++ +D
Sbjct: 63 RGDNIVLVGEVD 74
>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein, putative - Cryptosporidium parvum
Iowa II
Length = 92
Score = 37.5 bits (83), Expect = 0.21
Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +3
Query: 222 GVLRGFDPFMNLVLDESXE--ECKDGQR-NNVGMVVIRGNSIIML 347
GV++GFD +MN+VLD++ E K+ +R +VG +++RG +I ++
Sbjct: 44 GVIQGFDEYMNIVLDQASEVYTKKEVRRETSVGQLLLRGENISLI 88
>UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus
fulgidus|Rep: SnRNP, putative - Archaeoglobus fulgidus
Length = 75
Score = 37.5 bits (83), Expect = 0.21
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGR-AVTGVLRGFDPFMNLVLDESXEECKDGQR-NNVGMVVIRGNS 335
+K + K + +++ + G L G D +MNL L + E CK ++ ++G +V+RGN+
Sbjct: 8 VKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAME-CKGEEKVRSLGEIVLRGNN 66
Query: 336 IIMLE 350
+++++
Sbjct: 67 VVLIQ 71
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 37.5 bits (83), Expect = 0.21
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNN 305
L++ + K + +KL R+V G ++GFD MN+V+ E+ E + NN
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNN 58
>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 88
Score = 37.1 bits (82), Expect = 0.28
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +3
Query: 141 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXEECKDGQR-NNV 308
S+ P EL + + K+ + + + + G+L+GFD ++N+VL++ E +G+R +
Sbjct: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 309 GMVVIRGNSIIML 347
+++ GN+I +L
Sbjct: 66 DQILLNGNNIAIL 78
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 37.1 bits (82), Expect = 0.28
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE---ECKDG-QRNNVGMVVIRG 329
L+ +++ +SI GR G L+GFD +N+++DE E G ++ +G+ +IRG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRG 63
Query: 330 NSIIMLESLD 359
++I ++ +D
Sbjct: 64 DNIAVIGLID 73
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 37.1 bits (82), Expect = 0.28
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +3
Query: 147 AHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEE 281
+H LK +D KL + GR G L FD MNLVL + EE
Sbjct: 6 SHRSTLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEE 50
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 37.1 bits (82), Expect = 0.28
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEE------CKDGQ-------RN 302
+K + +++ IKL R VTGVL +D MN+V+ ++ E ++GQ R
Sbjct: 16 VKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERR 75
Query: 303 NVGMVVIRGNSIIMLESLDR 362
M+ +RG+ +I+L ++
Sbjct: 76 TAEMLFVRGDGVILLSPAEQ 95
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 37.1 bits (82), Expect = 0.28
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE---ECKDGQRN-----NVGMV 317
+ K +++K+ I L + R G L GFD F+N++L+++ E + +D RN + G +
Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRM 71
Query: 318 VIRGNSIIML 347
++ GN+I +L
Sbjct: 72 LLSGNNIAIL 81
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 37.1 bits (82), Expect = 0.28
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--------SXEECKDGQRNNVGMV 317
LK +D+++ IKL R + G L+ FD N+VL + + EE + +R MV
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESER-RCEMV 66
Query: 318 VIRGNSIIMLES 353
IRG+++ ++ +
Sbjct: 67 FIRGDTVTLIST 78
>UniRef50_Q98RT8 Cluster: Small nucleolar ribonucleoprotein G; n=1;
Guillardia theta|Rep: Small nucleolar ribonucleoprotein
G - Guillardia theta (Cryptomonas phi)
Length = 74
Score = 36.7 bits (81), Expect = 0.37
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSI 338
E+ F+ KK+++ L + G L GFD F N+V+ ++ + ++ N + V+IRG+S+
Sbjct: 9 EISNFIQKKVNVILINQINLKGTLVGFDNFSNIVIKKNQVKQENCFINEI--VLIRGDSL 66
Query: 339 IMLE 350
+ +E
Sbjct: 67 VSIE 70
>UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 94
Score = 36.7 bits (81), Expect = 0.37
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV--GMVVIRG 329
P L K + + + + L G G L+ FD +MN+ L E+ EE ++G G ++IR
Sbjct: 26 PFLAKLVGQNVFVTLKWGMEYKGFLKSFDSYMNIEL-ENAEEWENGVMKGTLGGTILIRC 84
Query: 330 NSIIMLESLD 359
N+++ + + +
Sbjct: 85 NNVLHIRAAE 94
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 36.7 bits (81), Expect = 0.37
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC----KDG-----QRNNVGMVVIR 326
M+K++ +K+ G+ + GVL +D N++L + E K+G ++N + M+ +R
Sbjct: 15 MEKRVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNGKFIPVRQNQIDMLFVR 74
Query: 327 GNSIIMLESL 356
G+ I+ + ++
Sbjct: 75 GDRIVSIATI 84
>UniRef50_A7TII8 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 109
Score = 36.7 bits (81), Expect = 0.37
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV-VIRGN 332
P LK +++KK+ I GR + L GFD NLVL + + + G V V ++RG+
Sbjct: 3 PLLKDYLNKKIVIITTEGRCLLATLEGFDKNTNLVLSQVHD--RFGSSGVVQAVQLLRGS 60
Query: 333 SIIMLESLD 359
++ LD
Sbjct: 61 EVVSCGLLD 69
>UniRef50_Q4JAY5 Cluster: Conserved Archaeal protein; n=4;
Sulfolobaceae|Rep: Conserved Archaeal protein -
Sulfolobus acidocaldarius
Length = 144
Score = 36.3 bits (80), Expect = 0.49
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 132 LQLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFD--PFMNLVLDESXEECKDGQRNN 305
+ +S+ +L +DK + +KLN + +GVL F+ PFM +L+ KD N
Sbjct: 1 MSVSRRISGDLGSLLDKTIIVKLNNNKVYSGVLSSFEVSPFMVSLLN-----AKDNDNNM 55
Query: 306 VGMVVIRGNSI 338
V+I GN I
Sbjct: 56 YYKVIINGNMI 66
>UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 82
Score = 35.9 bits (79), Expect = 0.65
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGF------DPFMNLVL---DESXEECKDGQ--RNNV 308
LKK+++K+++I + G + F D FMNLVL +E + KD Q R +
Sbjct: 8 LKKYINKRINIVTKNYDRINGRYKKFYRLLAYDKFMNLVLSDVEEYINDKKDSQEIRRVL 67
Query: 309 GMVVIRGNSIIMLES 353
G++V+RG+ II L S
Sbjct: 68 GLMVLRGSEIIYLFS 82
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 35.9 bits (79), Expect = 0.65
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE--ECKDGQ-----RNNVGMVV 320
++K+++ ++ + + R + G L FD MNLVL + E K G+ + ++G+++
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIM 60
Query: 321 IRGNSII 341
+RG +I+
Sbjct: 61 LRGENIV 67
>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 80
Score = 35.9 bits (79), Expect = 0.65
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE-ECKD-GQRNNVGMVVIRGNS 335
+ + +++ + + L + R TG L GFD F+N+V+++ E + D + + G +++ GN+
Sbjct: 9 IDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRHPGRMLLSGNN 68
Query: 336 IIML 347
I +L
Sbjct: 69 ITVL 72
>UniRef50_UPI000049972A Cluster: hypothetical protein 54.t00001;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 54.t00001 - Entamoeba histolytica HM-1:IMSS
Length = 114
Score = 35.5 bits (78), Expect = 0.85
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 234 RATHR*QRDPHSALLTIFCP*IFSILVDVLLTVVMCFLKYYNTELMLLSWI 82
+ THR PHS L+ + C S+L +V+L+V+ F N L +++I
Sbjct: 25 KITHRQHLQPHSILINLICLLKTSLLTEVVLSVIFIFSILSNNHLFKMNFI 75
>UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 107
Score = 35.5 bits (78), Expect = 0.85
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR---NNVGMVVIRGN 332
L++ ++ +++ G + G+L +D MNLVL + E +D Q+ +G++V+RG
Sbjct: 8 LQRLLNGLVTVTTVEGLSFQGILMNYDEHMNLVLRQVEEIPQDNQQREPKRIGLMVMRGC 67
Query: 333 SIIMLESL 356
++ +E++
Sbjct: 68 NVSTVEAV 75
>UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_43387_42998 - Giardia lamblia
ATCC 50803
Length = 129
Score = 35.1 bits (77), Expect = 1.1
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
P+L ++ L++ G TG L D MN+V+ K+ R ++G+VV+RG
Sbjct: 5 PKLVNYVGSPLTVHALNGYVYTGTLLAIDRHMNMVISSCCCRVKESAR-SLGLVVLRGEE 63
Query: 336 I 338
+
Sbjct: 64 V 64
>UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 93
Score = 35.1 bits (77), Expect = 1.1
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 144 KAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC-KDGQRNNVGMVV 320
K + LK+ ++ + N+ + G L GFD +MNLVL +S E K+ R +G +
Sbjct: 17 KIYVSYLKERARLRVHLNDNSKMYMEGNLLGFDEYMNLVLGDSYEVYPKENTRVPLGTSL 76
Query: 321 IRGNSIIMLESLDRL 365
+RG + M+ + +
Sbjct: 77 LRGECVGMVHPIPNI 91
>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
E - Saccharomyces cerevisiae (Baker's yeast)
Length = 94
Score = 35.1 bits (77), Expect = 1.1
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Frame = +3
Query: 207 GRAVTGVLRGFDPFMNLVLDESXE---ECKDGQRN-----NVGMVVIRGNSIIMLESLD 359
G + G + GFD FMN+V+DE+ E DG+ + +G ++++G++I ++ S D
Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>UniRef50_Q8SRU9 Cluster: U6 snRNA-ASSOCIATED SMALL
RIBONUCLEOPROTEIN; n=1; Encephalitozoon cuniculi|Rep: U6
snRNA-ASSOCIATED SMALL RIBONUCLEOPROTEIN -
Encephalitozoon cuniculi
Length = 102
Score = 34.7 bits (76), Expect = 1.5
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR---NNVGMVVIRG 329
+ +K++++++ + L GR + GV++ FD F ++ LD E R + +IRG
Sbjct: 11 DYEKYLEQEVVVMLRDGRYLYGVMKSFDQFNSVTLDGVIERIFHDTRYAERRHELFIIRG 70
Query: 330 NSIIML 347
+I M+
Sbjct: 71 ENITMI 76
>UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3;
Dikarya|Rep: Putative uncharacterized protein - Ustilago
maydis (Smut fungus)
Length = 136
Score = 34.7 bits (76), Expect = 1.5
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 201 NAGRAVTGVLRGFDPFMNLVLDESXE--ECKDGQRNNVGMVVIRGNSII 341
N + G + GFD FMN+ L ++ E KD +R +G ++++G++I+
Sbjct: 32 NVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNKRVELGRILLKGDNIV 80
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 34.7 bits (76), Expect = 1.5
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV---GMVVIRGN 332
LK ++K + +KL G G L D MNLVL + E ++G + V G V+IRG+
Sbjct: 12 LKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCT-EYREGTSDPVAKYGRVLIRGS 70
Query: 333 SIIMLESLD 359
+I+ + S+D
Sbjct: 71 NILFI-SID 78
>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Pyrococcus furiosus
Length = 76
Score = 34.7 bits (76), Expect = 1.5
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ-RNNVGMVVIRGNSI 338
+ K +DK + + L G G L G+D +N+VL + E +DG+ G +VIRG+++
Sbjct: 9 IHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVL-ANAELLQDGEVVKKYGKIVIRGDNV 67
Query: 339 IML 347
+ +
Sbjct: 68 LAI 70
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putative;
n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 34.3 bits (75), Expect = 2.0
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 183 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIMLESLDR 362
K+SI++ G G + MN++L ++ + + G+ + V +RG++I+ + D
Sbjct: 17 KVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVRGSNIVFFQLPDA 76
Query: 363 L 365
L
Sbjct: 77 L 77
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 34.3 bits (75), Expect = 2.0
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE 278
+ K + ++ + +N G+ TG L GFD ++N+VL+E E
Sbjct: 21 IDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTE 59
>UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 234
Score = 34.3 bits (75), Expect = 2.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE 278
L +DKK+ + L + G+LR +D F NLVL E E
Sbjct: 97 LLDMVDKKVDVLLRDEKEYIGILRSYDQFANLVLTECHE 135
>UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf
protein; n=1; Mus musculus|Rep: PREDICTED: similar to
Snrpf protein - Mus musculus
Length = 209
Score = 33.9 bits (74), Expect = 2.6
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 132 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 191
Query: 336 IIMLESLD 359
++ + ++
Sbjct: 192 VLYIRGVE 199
>UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like
protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U6
snRNA-associated Sm-like protein - Entamoeba histolytica
HM-1:IMSS
Length = 71
Score = 33.9 bits (74), Expect = 2.6
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 165 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
K+ + + SIKLN G G + D MN+VL+ + E + N IRGN+
Sbjct: 14 KEALFHECSIKLNDGTIFKGKMTLIDGLMNIVLENAIEYINGNKDNEYPECFIRGNN 70
>UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 83
Score = 33.9 bits (74), Expect = 2.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 180 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
K + +KLN G G+L D MNL ++ + E C G IRGN+
Sbjct: 16 KPVIVKLNNGTRFRGLLSSLDDRMNLAMENTKEYCDGELVKAYGDSFIRGNN 67
>UniRef50_Q4P8W1 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 382
Score = 33.9 bits (74), Expect = 2.6
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 141 SKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEE--CKDGQR--NNV 308
SKA +K F+ + + + GRA GV D N++L ++ E +G+ NV
Sbjct: 10 SKAVETIIKNFVGRTSIVHIPDGRAFRGVFICVDSGKNIILADTDETRLTPEGRTTIRNV 69
Query: 309 GMVVIRGNSIIMLE 350
GMV+I G ++ +E
Sbjct: 70 GMVMIPGEYVVKVE 83
>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Thermofilum pendens Hrk 5|Rep: Like-Sm
ribonucleoprotein, core - Thermofilum pendens (strain
Hrk 5)
Length = 100
Score = 33.9 bits (74), Expect = 2.6
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ-RNNVGMVVIRGNSI 338
L+ K + +KL G G LR D MNLVLD++ E + + +G V IRG+++
Sbjct: 7 LRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVFIRGSNL 66
Query: 339 IML 347
+ +
Sbjct: 67 LFV 69
>UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20;
Euteleostomi|Rep: Small nuclear ribonucleoprotein F -
Homo sapiens (Human)
Length = 86
Score = 33.9 bits (74), Expect = 2.6
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 336 IIMLESLD 359
++ + ++
Sbjct: 69 VLYIRGVE 76
>UniRef50_O22305 Cluster: Peptide transporter; n=1; Lotus
japonicus|Rep: Peptide transporter - Lotus japonicus
Length = 574
Score = 33.5 bits (73), Expect = 3.4
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +3
Query: 30 VKFIDKIRWVGNSSNIQKSTTITLIPYYNILKS 128
V IDK+ W+GN+ N +S IT++P+++++ +
Sbjct: 505 VTMIDKLNWIGNNLNDSQS-RITIMPFFSVISA 536
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 33.5 bits (73), Expect = 3.4
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD-----------ESXEECKDGQRNNVGMVV 320
M++++ +K R + G L +D +N++L E+ EE N+ MV
Sbjct: 1 MEEEIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKMERNLDMVF 60
Query: 321 IRGNSIIMLES 353
+RG+SII++ S
Sbjct: 61 VRGDSIILVSS 71
>UniRef50_A2DLB2 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 76
Score = 33.5 bits (73), Expect = 3.4
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
L+ + K + L+ G + G L D NLVL ++ E + + IRGN ++
Sbjct: 11 LQATLQKPTHVVLSTGSQLIGTLCTIDALFNLVLRDAVEMSNGNEVGKYQSIFIRGNQVV 70
Query: 342 MLESLD 359
+ + D
Sbjct: 71 HVATAD 76
>UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 191
Score = 33.5 bits (73), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 144 KAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEE 281
K +L +D ++ + + GR G L FD +MNLV+ + EE
Sbjct: 7 KKKETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEE 52
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 33.5 bits (73), Expect = 3.4
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 138 LSKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV-G 311
LS P E+ K + K+ + + + G L GFD ++N+VL+ E +G + V
Sbjct: 18 LSTILPLEIIDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEFDNEGPKGKVIK 77
Query: 312 MVVIRGNSIIML 347
+++ G+ + ML
Sbjct: 78 KMLLNGSQVAML 89
>UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 91
Score = 33.5 bits (73), Expect = 3.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR-NNVGMVVIRGNSI 338
LK +++ + +K+ G G L D MN+VL E DG+ G V+IRG+ I
Sbjct: 15 LKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEYGDDGKPIARYGKVLIRGSHI 74
Query: 339 IML 347
+ +
Sbjct: 75 VFI 77
>UniRef50_Q26BV4 Cluster: Putative uncharacterized protein; n=2;
Flavobacteria|Rep: Putative uncharacterized protein -
Flavobacteria bacterium BBFL7
Length = 234
Score = 33.1 bits (72), Expect = 4.6
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +3
Query: 33 KFIDKIRWVGNSSNIQKSTTITLIPYYNILKSTLQLSKAHPPELKKFMDKKLSIKLNAGR 212
K D++ W ++K+T + + IL + K + + + + L +
Sbjct: 85 KMNDRMEWF-----LEKATEMGISRITPILSQHSERQKINLDRFNRIIVSAMKQSLQFHK 139
Query: 213 AVTGVLRGFDPFMNL--VLDESXEECKDGQRNNVGMVVIRGNSIIML 347
L F+ F+N V D+ C+DG +N++ ++ +GNS +L
Sbjct: 140 PELDALTNFEDFINAKNVSDKFIAHCEDGDKNHLKNLIHKGNSTTVL 186
>UniRef50_Q6ICW6 Cluster: At5g55560; n=9; Magnoliophyta|Rep:
At5g55560 - Arabidopsis thaliana (Mouse-ear cress)
Length = 314
Score = 33.1 bits (72), Expect = 4.6
Identities = 18/62 (29%), Positives = 35/62 (56%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
L+K + PE K F++K ++ + A + +L DPF + +LD+ E+ ++ N G +
Sbjct: 255 LNKVNDPEAKAFIEKCIA-QPRARPSAAELL--CDPFFDGILDDDDEDGENNDNNGAGRI 311
Query: 318 VI 323
V+
Sbjct: 312 VV 313
>UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiella
natans|Rep: MRNA splicing protein - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 80
Score = 33.1 bits (72), Expect = 4.6
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +3
Query: 210 RAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSI 338
+ + G + GFD +MN+VL E+ + K+ ++ +++++GN I
Sbjct: 31 KTINGKIIGFDEYMNIVLSEAVAKNKEVEKIK-NLILVKGNQI 72
>UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 158
Score = 33.1 bits (72), Expect = 4.6
Identities = 17/73 (23%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE-----ECKDGQ----RNNVG 311
+L KF++ ++ + ++ R G + FD N+VL + E K G+ + N+G
Sbjct: 8 KLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRLNRRKAGELQEAKRNIG 67
Query: 312 MVVIRGNSIIMLE 350
++++RG +++ ++
Sbjct: 68 LMILRGETVLHID 80
>UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN;
n=1; Encephalitozoon cuniculi|Rep: U6 snRNA-ASSOCIATED
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 94
Score = 33.1 bits (72), Expect = 4.6
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 183 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSI 338
++S+ L AG V+G L G DP++NL L + +++ + IRG+SI
Sbjct: 14 RVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSSHPGLSSISVCSIRGSSI 65
>UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 232
Score = 33.1 bits (72), Expect = 4.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE 278
++ ++ +L I LN R + G L FD MNLVL +S E
Sbjct: 10 KMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQE 49
>UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear
ribonucleoprotein; n=2; Thermoprotei|Rep: 90aa long
hypothetical small nuclear ribonucleoprotein -
Sulfolobus tokodaii
Length = 90
Score = 33.1 bits (72), Expect = 4.6
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 120 LKSTLQLSKAHPP--ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDG 293
++ T+ +K P LK +K + +KL G G L D MNLVL + E ++G
Sbjct: 1 MRMTIVQAKIENPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCI-ETREG 59
Query: 294 QRNNV---GMVVIRGNSIIML 347
V G V+IRG++I+ +
Sbjct: 60 TAEPVAKYGRVLIRGSNILFI 80
>UniRef50_Q9LMB5 Cluster: F14D16.28; n=6; core eudicotyledons|Rep:
F14D16.28 - Arabidopsis thaliana (Mouse-ear cress)
Length = 223
Score = 32.7 bits (71), Expect = 6.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPF 248
L ++DKKL + L GR + G+LR FD F
Sbjct: 72 LAAYLDKKLLVLLRDGRKLMGLLRSFDQF 100
>UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm3,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm3, putative - Plasmodium vivax
Length = 91
Score = 32.7 bits (71), Expect = 6.0
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD-----------ESXEECKDGQRNNVGMVV 320
M++++ +K R + G L +D +N++L E+ EE N+ MV
Sbjct: 18 MEEEVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVENDEESVKKIERNLDMVF 77
Query: 321 IRGNSIIMLES 353
+RG+SII++ S
Sbjct: 78 VRGDSIILVSS 88
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 32.7 bits (71), Expect = 6.0
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 222 GVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIMLESLDRLXXT 374
G L FD +MN++L++ E + ++ +G V IR N+++ + + T
Sbjct: 5 GTLVSFDEYMNILLNDCEEWIDNTKKGTLGKVFIRCNNVLYISRAEESKET 55
>UniRef50_Q6FJA6 Cluster: Similar to sp|P47093 Saccharomyces
cerevisiae YJR022w pre-mRNA splicing factor; n=1;
Candida glabrata|Rep: Similar to sp|P47093 Saccharomyces
cerevisiae YJR022w pre-mRNA splicing factor - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 105
Score = 32.7 bits (71), Expect = 6.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE 269
P LK++++K + + AG + VL G+D + NLV+ E
Sbjct: 3 PLLKQYLNKDIVVVTTAGEVMHVVLDGYDKYTNLVVKE 40
>UniRef50_Q6CFJ1 Cluster: Similar to sp|O95777 Homo sapiens U6
snRNA-associated Sm-like protein LSm8; n=1; Yarrowia
lipolytica|Rep: Similar to sp|O95777 Homo sapiens U6
snRNA-associated Sm-like protein LSm8 - Yarrowia
lipolytica (Candida lipolytica)
Length = 97
Score = 32.7 bits (71), Expect = 6.0
Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC----KDGQRNNVGMVVIRG 329
L +++K +++ GR + G+L+G+D N++L + E + + ++G+ ++RG
Sbjct: 4 LSGYINKPVTVITTDGRLILGILQGYDQATNVILSNTRERVITPDEPTEVVDLGLYMLRG 63
Query: 330 NSIIMLESLD 359
+ I + D
Sbjct: 64 DCIACVGETD 73
>UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 157
Score = 32.7 bits (71), Expect = 6.0
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 165 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD--ESXEECKDGQRNNVGMVVIRGNSI 338
K +D +++++L + G+L+ D ++N+ LD + EE K ++V V IRG+ +
Sbjct: 67 KTLVDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNVFIRGSVV 126
>UniRef50_Q18CQ7 Cluster: Putative sigma-54-dependent
transcriptional regulator; n=8; Clostridium
difficile|Rep: Putative sigma-54-dependent
transcriptional regulator - Clostridium difficile
(strain 630)
Length = 670
Score = 32.3 bits (70), Expect = 8.0
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 33 KFIDKIRWVGNSSNIQKSTTITLIPYYNILKSTLQLSKAHPPELKKFMDKKLSIKL 200
K I W GN +Q T+ Y NI+ + L K PP L+ +K S+KL
Sbjct: 535 KLIQNYMWKGNIRELQNVTS-----YLNIMCEDIVLEKDLPPNLRSSDNKNTSLKL 585
>UniRef50_Q55A45 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=2;
Dictyostelium discoideum|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 274
Score = 32.3 bits (70), Expect = 8.0
Identities = 15/71 (21%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE------ECKDG--QRNNVGM 314
++ ++++ ++ + + GR + G FD MN+V+ ++ E + K+ ++ +GM
Sbjct: 9 KMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGM 68
Query: 315 VVIRGNSIIML 347
++IRG +++ +
Sbjct: 69 ILIRGETVVSM 79
>UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p -
Drosophila melanogaster (Fruit fly)
Length = 121
Score = 32.3 bits (70), Expect = 8.0
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNN-VGMVVIRGNS 335
+L+K++ + L I + GR + G D N+VL E +GQ +G V++ G
Sbjct: 44 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQEPRLLGNVMVPGQH 103
Query: 336 IIMLESLD 359
I+ L S+D
Sbjct: 104 IVSL-SID 110
>UniRef50_Q75BR7 Cluster: ACR204Cp; n=2; Saccharomycetales|Rep:
ACR204Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 85
Score = 32.3 bits (70), Expect = 8.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV----GMVVIRG 329
L + K +++KL++G G L D FMN+ L ++ E + Q + V +RG
Sbjct: 17 LSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPVIHRYESDVFLRG 76
Query: 330 NSIIMLESL 356
++ + L
Sbjct: 77 TQVMYISEL 85
>UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 187
Score = 32.3 bits (70), Expect = 8.0
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 126 STLQLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR-N 302
S L SK+ L + ++L +G + G+L D +MNL L E + DG +
Sbjct: 55 SLLWQSKSQYGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFM 114
Query: 303 NVGMVVIRGNSIIMLESLDRL 365
+ + +RG++I L D +
Sbjct: 115 RLPEIYVRGSTIKYLRVPDEI 135
>UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 95
Score = 32.3 bits (70), Expect = 8.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV-GMVVIRGNS 335
L + ++ +KLN G L+ D +MN+ L E EE G++ V G +RGN+
Sbjct: 18 LSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIAL-EKCEEWVHGKKKTVHGDAFVRGNN 75
>UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Rep:
SnRNP homolog - Halobacterium salinarium (Halobacterium
halobium)
Length = 69
Score = 32.3 bits (70), Expect = 8.0
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 266
L++ +++ ++++L G TGVL G+D MN+V++
Sbjct: 18 LEESLEETVTVRLKDGDEFTGVLTGYDQHMNVVIE 52
>UniRef50_Q8ZVU2 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 144
Score = 32.3 bits (70), Expect = 8.0
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 120 LKSTL-QLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ 296
+ STL + SK EL + +++ + L+ G GVL D +N+VL + K G+
Sbjct: 1 MASTLAEASKRFVAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASN--KAGE 58
Query: 297 RNNVGMVVIRGNSIIMLESLDR 362
+ N V I I+ ++S +R
Sbjct: 59 KFN--RVFIMYRYIVHIDSTER 78
>UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;
Fungi/Metazoa group|Rep: Uncharacterized protein
C26A3.08 - Schizosaccharomyces pombe (Fission yeast)
Length = 147
Score = 32.3 bits (70), Expect = 8.0
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV---------- 308
++ ++ L++ GR G L FD FMNLVL + +E + ++ NV
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDC-QEYRHIKKQNVPSNSVYEEKR 63
Query: 309 --GMVVIRGNSIIML 347
G+V++RG I+ L
Sbjct: 64 MLGLVILRGEFIVSL 78
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,901,654
Number of Sequences: 1657284
Number of extensions: 7630756
Number of successful extensions: 16662
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 16335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16640
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -