Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B02
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 92 4e-20
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 58 1e-09
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 48 7e-07
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 46 5e-06
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 44 2e-05
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 42 6e-05
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 32 0.050
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 31 0.15
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 30 0.27
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 29 0.47
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 27 1.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 1.9
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 7.6
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 25 7.6
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 7.6
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr... 25 7.6
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 92.3 bits (219), Expect = 4e-20
Identities = 39/76 (51%), Positives = 61/76 (80%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
+SKA P+LKK++D+++ ++LN R V GVLRG+D F+N+VL++S EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 318 VIRGNSIIMLESLDRL 365
IRGNS+IM+E+LD++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 57.6 bits (133), Expect = 1e-09
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD-------GQRNNVGMV 317
+L ++ D+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 318 VIRGNSIIMLESLD 359
V+RG +++++ +D
Sbjct: 87 VVRGTTLVLIAPMD 100
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 48.4 bits (110), Expect = 7e-07
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV-GMVVIRGNSI 338
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 339 IMLESLD 359
+ + +LD
Sbjct: 68 LYVSALD 74
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 45.6 bits (103), Expect = 5e-06
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC-KDGQRNNV--GMVVIRGN 332
L ++D+K+ + L G+ + G+LR FD F NL+L + E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 333 SIIMLESLD 359
++++L LD
Sbjct: 76 NVVLLGELD 84
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEEC----KDGQRNNVGMVVIRG 329
L FM++++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 330 NSIIML 347
++ M+
Sbjct: 63 ENVAMV 68
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 41.9 bits (94), Expect = 6e-05
Identities = 14/45 (31%), Positives = 32/45 (71%)
Frame = +3
Query: 222 GVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSIIMLESL 356
G +RGFD FMN+VLD++ + + +G ++++G++I +++++
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 32.3 bits (70), Expect = 0.050
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV---------- 308
++ ++ L++ GR G L FD FMNLVL + +E + ++ NV
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKR 63
Query: 309 --GMVVIRGNSIIML 347
G+V++RG I+ L
Sbjct: 64 MLGLVILRGEFIVSL 78
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 30.7 bits (66), Expect = 0.15
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSI 338
+ K + L + + + R G L GFD ++N+VL + E + G +++ GN +
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70
Query: 339 IML 347
ML
Sbjct: 71 CML 73
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 29.9 bits (64), Expect = 0.27
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 180 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR-NNVGMVVIRGNSIIMLESL 356
+ + ++L G G L D +MNL L E DG + + IRGN+I L
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQ 72
Query: 357 DRL 365
D +
Sbjct: 73 DEV 75
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 29.1 bits (62), Expect = 0.47
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 147 AHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE 278
A P +L + +D+ + +KL R + G L +D +N+VL ++ E
Sbjct: 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 165 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 266
K +D +++++L ++ G+L+ D F+N+ L+
Sbjct: 8 KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 259 TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 167
T+ GSKP NT V A S ++ ++MNF
Sbjct: 919 TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 99 LIPYYNILKSTLQLSKAHPPELKK 170
L+ Y+N++ T++L + PELK+
Sbjct: 1547 LVKYHNMILKTIELLSSSYPELKQ 1570
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 416 EAHLQHW*YXLPTLSXXK--SV*RFQHYNTV 330
++H HW Y LPT + K SV R +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 81 KSTTITLIPYYNILKSTLQLSKAH 152
++ TI P+YN+LK + Q S H
Sbjct: 664 RAPTIYYTPFYNLLKKSAQQSLFH 687
>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
3|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 346 WNL*TDFXXLRVGXKYHQCCKCASLFI 426
WNL TD L H C KC SLFI
Sbjct: 39 WNLETDPKTL-----LHGCSKCGSLFI 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,628
Number of Sequences: 5004
Number of extensions: 34698
Number of successful extensions: 90
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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