Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B02
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)              30   1.5  
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                 29   3.4  
SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)                     28   6.0  
SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)                       28   6.0  
SB_45742| Best HMM Match : Pentapeptide (HMM E-Value=2.8)              27   7.9  

>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
          Length = 327

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 228 THR*QRDPHSALLTIFCP*IFSILVDVLLTV 136
           +H+ Q DPH+A L++ C  ++S   D L+ +
Sbjct: 139 SHKAQEDPHNAFLSLLCHVVYSAEPDWLMNI 169


>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 135 QLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRG 236
           ++S A P ++K  +DK + IKLN G   T  L G
Sbjct: 248 EVSHAEPADIKAALDKLVVIKLNGGLGTTMGLVG 281


>SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)
          Length = 380

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 338 YNAGIFR-QTLXXLEWAXNITNAVNVL 415
           YN G+F+ +TL   EW   IT+  NVL
Sbjct: 147 YNLGVFKTKTLEDEEWGLTITSLKNVL 173


>SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)
          Length = 198

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 234 GFDPFMNLVLDESXE 278
           GFD +MNLVLDE+ E
Sbjct: 124 GFDEYMNLVLDEAEE 138


>SB_45742| Best HMM Match : Pentapeptide (HMM E-Value=2.8)
          Length = 213

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 169 FFNSGGCAFDSCNVLFKI 116
           F   G C+FD+CN+ FK+
Sbjct: 162 FIAKGYCSFDTCNLKFKV 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,802,082
Number of Sequences: 59808
Number of extensions: 234634
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)