Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B02
(561 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 107 5e-24
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 107 5e-24
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 58 3e-09
AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like ... 48 5e-06
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 44 8e-05
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 40 0.001
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 39 0.003
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 38 0.004
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 34 0.080
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 32 0.32
U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical pr... 29 2.3
U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF039049-9|AAB94248.1| 494|Caenorhabditis elegans Cytochrome p4... 29 3.0
Z82269-1|CAB05205.2| 651|Caenorhabditis elegans Hypothetical pr... 27 7.0
U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear r... 27 9.2
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 27 9.2
AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical... 27 9.2
AF016418-1|AAK18902.1| 494|Caenorhabditis elegans Hypothetical ... 27 9.2
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 107 bits (257), Expect = 5e-24
Identities = 45/76 (59%), Positives = 62/76 (81%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
+SK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+ E KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 318 VIRGNSIIMLESLDRL 365
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 107 bits (257), Expect = 5e-24
Identities = 45/76 (59%), Positives = 62/76 (81%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
+SK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+ E KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 318 VIRGNSIIMLESLDRL 365
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 58.4 bits (135), Expect = 3e-09
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNV--------GM 314
+L +F+DK++ +K GR +GVLRGFD +N+VLD+ E +D Q +V G+
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74
Query: 315 VVIRGNSIIMLESLDRL 365
+V RG +I ++ D L
Sbjct: 75 IVARGTAITVVSPADGL 91
>AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like
protein protein 6 protein.
Length = 77
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +3
Query: 144 KAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ-RNNVGMV 317
+ +P E LKK + K + +KLN+G G+L D +MN+ L+++ EE +GQ +N G
Sbjct: 4 RQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQT-EEYSNGQLQNKYGDA 62
Query: 318 VIRGNSIIMLES 353
IRGN+++ + +
Sbjct: 63 FIRGNNVLYIST 74
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE----ECKDGQRNNVGMVVIRG 329
L +M++ +++ GR + G+L+GFD +NLV++++ E E + +G+ +IRG
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64
Query: 330 NSIIMLESLD 359
++ ++ +D
Sbjct: 65 ENVAIIGEID 74
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEE-------CKDGQRNNVGMVVIRGN 332
+DKKL + L GR + G LR D F NL+L++ E C+ GQ G ++IRG
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73
Query: 333 SIIMLESLD 359
++ + +D
Sbjct: 74 NVELAGEID 82
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 222 GVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIMLES 353
G + GFD FMN+V DE+ E K RN +G ++++G++I ++ +
Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHA 85
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNS 335
P L K + KL G GVL D +MNL L + E + N+G ++IR N+
Sbjct: 11 PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70
Query: 336 IIMLESLD 359
++ + +D
Sbjct: 71 VLYVGGVD 78
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXEECKDGQR-NNVGMVVIRGN 332
+ K + K+ + + + + G L GFD ++N+VL++ E DG+R + +++ GN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77
Query: 333 SIIML 347
I ML
Sbjct: 78 HITML 82
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.080
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Frame = +3
Query: 129 TLQLSKAHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE------------ 269
TL + P +L + +D+++ +K+ R + G LR FD +N+VL E
Sbjct: 9 TLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDE 68
Query: 270 -SXEECKDGQRNNVGMVVIRGNSIIML 347
+ EE + V M+ +RG+S+I++
Sbjct: 69 DTFEEIYKQTKRVVPMLFVRGDSVILV 95
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECK---------DGQRNNV-GMVVI 323
++ ++ I L GR G + FD MN++L E E + DG+ + G+V++
Sbjct: 13 LNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLV 72
Query: 324 RGNSIIML 347
RG I+ +
Sbjct: 73 RGEHIVSM 80
>U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical
protein R11G1.6b protein.
Length = 901
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Frame = -1
Query: 165 SILVDVLLTVVMCF----LKYYNTELMLLSWIF 79
++LV V+LT+++C + YY + L +L W+F
Sbjct: 56 AVLVSVVLTILLCSVIWKILYYTSFLQVLGWLF 88
>U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical
protein R11G1.6a protein.
Length = 899
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Frame = -1
Query: 165 SILVDVLLTVVMCF----LKYYNTELMLLSWIF 79
++LV V+LT+++C + YY + L +L W+F
Sbjct: 56 AVLVSVVLTILLCSVIWKILYYTSFLQVLGWLF 88
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 135 QLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDP 245
+L K + P+ K DKK +IKL GR ++ DP
Sbjct: 247 KLGKGYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDP 283
>AF039049-9|AAB94248.1| 494|Caenorhabditis elegans Cytochrome p450
family protein 35A5 protein.
Length = 494
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 78 QKSTTITLIPYYNILKSTLQLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNL 257
Q++TT+TL+ +N L AHP + K ++ L I N R+++ R P++N
Sbjct: 307 QETTTVTLLCGFNHLL-------AHPEVMDKAREELLKITENRARSLSLSDRPTTPYLNA 359
Query: 258 VLDE 269
++ E
Sbjct: 360 MIGE 363
>Z82269-1|CAB05205.2| 651|Caenorhabditis elegans Hypothetical
protein F52G2.3 protein.
Length = 651
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 108 YYNILKSTLQLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECK 287
+ N L+ T + ++ +KKF+D R + LRG++P L+E +EC
Sbjct: 595 FKNKLERTNDMMESLCDAIKKFLDN---------RQLKETLRGYNPRRLQALEEKLKECS 645
Query: 288 DGQRNN 305
+ NN
Sbjct: 646 EHLENN 651
>U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear
ribonucleoprotein protein.
Length = 71
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 186 LSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSI 338
++++ G G L + MN L E+ +DG+ + + V IRGN I
Sbjct: 5 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 55
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQR-NNVGMVVIRGNSI 338
LK + + ++L G G L+ D +MN+ L + KDG + + +RG++I
Sbjct: 8 LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67
>AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical
protein Y116A8C.42 protein.
Length = 136
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 186 LSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSI 338
++++ G G L + MN L E+ +DG+ + + V IRGN I
Sbjct: 19 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69
>AF016418-1|AAK18902.1| 494|Caenorhabditis elegans Hypothetical
protein C49G7.8 protein.
Length = 494
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 78 QKSTTITLIPYYNILKSTLQLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNL 257
Q++TT TLI +N L HP + K ++ + + N R+++ R P++N
Sbjct: 307 QETTTTTLISGFNQLL-------LHPEVMVKAREELMKVTENGSRSLSLTDRASTPYLNA 359
Query: 258 VLDE 269
++ E
Sbjct: 360 MIGE 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,106
Number of Sequences: 27780
Number of extensions: 195438
Number of successful extensions: 410
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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