Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_B02
(561 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 92 2e-19
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 91 6e-19
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 60 8e-10
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 60 8e-10
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 54 9e-08
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 52 3e-07
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 50 1e-06
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 50 1e-06
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 43 1e-04
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 42 3e-04
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 40 0.002
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 39 0.003
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 38 0.003
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 37 0.008
At5g55560.1 68418.m06923 protein kinase family protein contains ... 33 0.13
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 32 0.30
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 32 0.30
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 31 0.40
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 31 0.40
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 30 1.2
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 29 2.8
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 27 6.5
At3g08730.1 68416.m01015 serine/threonine protein kinase (PK1) (... 27 8.6
At3g08720.2 68416.m01014 serine/threonine protein kinase (PK19) ... 27 8.6
At3g08720.1 68416.m01013 serine/threonine protein kinase (PK19) ... 27 8.6
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 92.3 bits (219), Expect = 2e-19
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +3
Query: 153 PPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGN 332
PP+LKK+MDKKL IKLNA R VTG LRGFD FMNLV+D + E + ++GMVVIRGN
Sbjct: 7 PPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGN 65
Query: 333 SIIMLESLD 359
SI+ +E+L+
Sbjct: 66 SIVTVEALE 74
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 90.6 bits (215), Expect = 6e-19
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +3
Query: 153 PPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGN 332
PP+LKK+MDKKL IKLNA R V G LRGFD FMNLV+D + E D + ++GMVVIRGN
Sbjct: 7 PPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGD-DKTDIGMVVIRGN 65
Query: 333 SIIMLESLD 359
SI+ +E+L+
Sbjct: 66 SIVTVEALE 74
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 60.5 bits (140), Expect = 8e-10
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 8/75 (10%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD--------GQRNNVGM 314
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+ E +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 315 VVIRGNSIIMLESLD 359
+V RG +++++ D
Sbjct: 70 IVCRGTAVMLVSPTD 84
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 60.5 bits (140), Expect = 8e-10
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 8/75 (10%)
Frame = +3
Query: 159 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKD--------GQRNNVGM 314
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+ E +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 315 VVIRGNSIIMLESLD 359
+V RG +++++ D
Sbjct: 70 IVCRGTAVMLVSPTD 84
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 53.6 bits (123), Expect = 9e-08
Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE---ECKDG-QRNNVGMVVIRG 329
L+ +D+ +S+ N GR + GVL+GFD N++LDES E K+G Q++ +G+ +IRG
Sbjct: 7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRG 66
Query: 330 NSIIMLESLD 359
++I ++ LD
Sbjct: 67 DNIGVIGELD 76
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 51.6 bits (118), Expect = 3e-07
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRN---NVGMVVIRGN 332
L ++DKKL + L GR + G+LR FD F N VL+E+ E G +G+ +IRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 333 SIIMLESLD 359
+++++ LD
Sbjct: 75 NVVLIGELD 83
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRN---NVGMVVIRGN 332
L ++D+KL + L GR + G LR FD F N VL+ + E G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 333 SIIMLESLD 359
+++++ LD
Sbjct: 75 NVVLIGELD 83
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRN---NVGMVVIRGN 332
L ++D+KL + L GR + G LR FD F N VL+ + E G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 333 SIIMLESLD 359
+++++ LD
Sbjct: 75 NVVLIGELD 83
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
LK K + +KLN+G G+L D +MN+ ++++ E +N G +RGN+++
Sbjct: 19 LKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVL 78
Query: 342 MLES 353
+ +
Sbjct: 79 YIST 82
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMVVIRGNSII 341
LK + + +KLN+G G L D +MN+ ++++ E +N G IRGN+++
Sbjct: 19 LKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
Query: 342 MLESLD 359
+ +++
Sbjct: 79 YISTVN 84
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 216 VTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIML 347
+ G + GFD +MNLVLDE+ E K R +G ++++G++I ++
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLM 83
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 216 VTGVLRGFDPFMNLVLDESXE-ECKDGQRNNVGMVVIRGNSIIML 347
+ G + GFD +MNLVLDE+ E K R +G ++++G++I ++
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLM 83
>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
putative / snRNP-F, putative / Sm protein F, putative
similar to SWISS-PROT:Q15356 small nuclear
ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
[Mouse]
Length = 88
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 156 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQ-RNNVGMVVIRGN 332
P L K + +KL G G L D +MNL L + EE DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNT-EEYIDGQLTGNLGEILIRCN 68
Query: 333 SIIMLESL 356
+++ + +
Sbjct: 69 NVLYVRGV 76
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +3
Query: 141 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SXEECKDGQR-NNV 308
S+ P EL + + K+ + + + + G+L+GFD ++N+VL++ E +G+R +
Sbjct: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 309 GMVVIRGNSIIML 347
+++ GN+I +L
Sbjct: 66 DQILLNGNNIAIL 78
>At5g55560.1 68418.m06923 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 314
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/62 (29%), Positives = 35/62 (56%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRNNVGMV 317
L+K + PE K F++K ++ + A + +L DPF + +LD+ E+ ++ N G +
Sbjct: 255 LNKVNDPEAKAFIEKCIA-QPRARPSAAELL--CDPFFDGILDDDDEDGENNDNNGAGRI 311
Query: 318 VI 323
V+
Sbjct: 312 VV 313
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 31.9 bits (69), Expect = 0.30
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECK----DGQ--- 296
+S + ++ +F++ ++ + + GR + G FD MNLVL + E K G+
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 297 -----RNNVGMVVIRGNSIIML 347
R +G+V++RG +I +
Sbjct: 61 EEREDRRTLGLVLLRGEEVISM 82
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 31.9 bits (69), Expect = 0.30
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECK----DGQ--- 296
+S + ++ +F++ ++ + + GR + G FD MNLVL + E K G+
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 297 -----RNNVGMVVIRGNSIIML 347
R +G+V++RG +I +
Sbjct: 61 EEREDRRTLGLVLLRGEEVISM 82
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 31.5 bits (68), Expect = 0.40
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Frame = +3
Query: 138 LSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXE-----ECKDGQRN 302
+S + ++ +F++ ++ + + GR + G FD MNLVL + E K ++
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 303 N--------VGMVVIRGNSIIML 347
N +G+V++RG +I +
Sbjct: 61 NEEREERRTLGLVLLRGEEVISM 83
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-------------DESXEECKDGQRNNVGM 314
+D+++ +KL + R + G L FD +N++L DE+ EE + +
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEF 79
Query: 315 VVIRGNSIIML 347
+ +RG+ +I++
Sbjct: 80 LFVRGDGVILV 90
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Frame = +3
Query: 174 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-------------DESXEECKDGQRNNVGM 314
+++++ +KL + R + G L FD +N++L DE+ EE + V
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79
Query: 315 VVIRGNSIIML 347
+ +RG+ +I++
Sbjct: 80 LFVRGDGVILV 90
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 162 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESXEECKDGQRN-NVGMVVIRGNSI 338
LK + ++L G G L D +MN+ L E KDG R + IRGN+I
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 66
Query: 339 IMLESLDRL 365
L D +
Sbjct: 67 KYLRVPDEV 75
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 63 NSSNIQKSTTITLIPYYNILKST--LQLSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRG 236
++ +Q+ ++ +YNI+ QL+K + + +K +KL++ N + V
Sbjct: 4 DNGKLQEEEASSVTRFYNIILGWDYKQLTKENERKNRKDSKEKLNVVKNTYKDVDDYFET 63
Query: 237 FDPFMNLVLDESXEECKDGQRNNV 308
F+P + + + KDG+ +V
Sbjct: 64 FEPLLFEEVKAQILQNKDGEEASV 87
>At3g08730.1 68416.m01015 serine/threonine protein kinase (PK1)
(PK6) identical to serine/threonine-protein kinase
AtPK1/AtPK6 (ribosomal-protein S6 kinase ATPK6)
[Arabidopsis thaliana] SWISS-PROT:P42818
Length = 465
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 311 DGGNSW*QYYNAGIFRQTLXXLEWAXNITNAVNVLHFSSI 430
+GG+ + Q Y+ G+FR+ L + + I +AV+ LH I
Sbjct: 215 NGGHLFFQLYHQGLFREDLARV-YTAEIVSAVSHLHEKGI 253
>At3g08720.2 68416.m01014 serine/threonine protein kinase (PK19)
identical to serine/threonine-protein kinase AtPK19
(Ribosomal-protein S6 kinase homolog) [Arabidopsis
thaliana] SWISS-PROT:Q39030
Length = 471
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 311 DGGNSW*QYYNAGIFRQTLXXLEWAXNITNAVNVLHFSSI 430
+GG+ + Q Y+ G+FR+ L + + I +AV+ LH I
Sbjct: 221 NGGHLFFQLYHQGLFREDLARV-YTAEIVSAVSHLHEKGI 259
>At3g08720.1 68416.m01013 serine/threonine protein kinase (PK19)
identical to serine/threonine-protein kinase AtPK19
(Ribosomal-protein S6 kinase homolog) [Arabidopsis
thaliana] SWISS-PROT:Q39030
Length = 471
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 311 DGGNSW*QYYNAGIFRQTLXXLEWAXNITNAVNVLHFSSI 430
+GG+ + Q Y+ G+FR+ L + + I +AV+ LH I
Sbjct: 221 NGGHLFFQLYHQGLFREDLARV-YTAEIVSAVSHLHEKGI 259
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,739,323
Number of Sequences: 28952
Number of extensions: 170723
Number of successful extensions: 407
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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