Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B01
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    99   6e-22
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   4.1  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   5.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   9.4  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   9.4  

>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 98.7 bits (235), Expect = 6e-22
 Identities = 65/185 (35%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
 Frame = +2

Query: 89  ILFVRILSVFLVRTWYVPDEYWQTLEVAHKQVFHYGELTWEWQRGIRSYLFPSVVAVLYS 268
           IL  R  +   V+T++ PDE++Q+LEVAH  +F YG LTWEW   IRS L P + A LY 
Sbjct: 9   ILVFRWWNALWVKTFFQPDEFYQSLEVAHHFIFRYGFLTWEWTSAIRSALHPLIFAALYR 68

Query: 269 ILKVTGLDHPEAVIL-LPRILQAILSTAADYSFYKWT----GGR--KWALFLILTSWFWF 427
           +L+V  LD    V    P++LQ   +   DY  YK+     G +   W L   L S    
Sbjct: 69  VLQVLKLDSSYFVFTNAPKLLQGTFAAILDYGTYKFALVRYGSKTANWTLACSLVSIMNA 128

Query: 428 YTSGRTLLQTTETALVAIALSVF----PFXSGKLGYYDKENTS---WIWLAVIAVFLRPT 586
           Y   RT   + ET L +I    F     + +       K  +S   +I +A  A F+RPT
Sbjct: 129 YVGVRTFSNSLETTLTSIGFYYFSYYLKYENSSPEQRKKAYSSLLGFISVAAFACFIRPT 188

Query: 587 SAPLW 601
           +  +W
Sbjct: 189 NILVW 193


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 342 VLQQTTVSINGQEVGSGLCSSFSHLGSGSILQAEH----CSRLQRQLLWQSPY 488
           VLQ+T VS+N +E     C+ FS  G G +  A H       +Q  + WQ  Y
Sbjct: 751 VLQKTAVSVNVKERLDYSCALFSPDG-GLVANAPHVPAMLGSMQTAVKWQHNY 802


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 321 GSYKQYSVLQQTTVSINGQ 377
           G+Y + SVLQ T V+++GQ
Sbjct: 242 GTYHEISVLQNTIVNVSGQ 260


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 438 AEHCSRLQRQLLWQSPYLFFHSXVENLDIMIKRTHHGYG 554
           A H      + LW+ PY  FHS   +L ++    H   G
Sbjct: 219 ALHVEHQTPENLWRLPYSSFHSKNSHLVVLTHGMHSNVG 257


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 211 FPGEFSIVEHLFMGHFQGLPVLVRNI 134
           +PG+F     LF+GH     +  RN+
Sbjct: 355 YPGQFPSASRLFLGHLNTKSLSKRNL 380


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 395 LFLILTSWFWFYTSGRTLLQTTETALVAIALSVFPFXSGKLGYYDK 532
           LF  ++  +W YTS  ++L  T  +++++A     +  G L  +DK
Sbjct: 307 LFRKVSRQYWPYTSENSVLANTPQSIISLAAQSCGYL-GLLHLFDK 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,680
Number of Sequences: 5004
Number of extensions: 61056
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)