Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B01
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              30   1.9  
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_51378| Best HMM Match : PAN (HMM E-Value=0.00096)                   29   3.3  
SB_57881| Best HMM Match : FeoB_C (HMM E-Value=3.7)                    29   4.3  
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)                      29   4.3  
SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)                      28   5.7  
SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)                    28   7.5  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_27318| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 627 SKL*IVSTAHRGAEVGRRNTAMTASHIHDVFSLS*YPSFPLLNGKTDKAIATRAVSVVWS 448
           S L   S+  + + +G   + +T S   + FS+S  P        +     TRA ++ W+
Sbjct: 191 SNLFSTSSVPQNSSLGHNTSLVTISRASNTFSISGIPQSSASGPYSSDITITRASNLFWT 250

Query: 447 SVLPE 433
           S LP+
Sbjct: 251 SSLPQ 255


>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 305 VILLPRILQAILSTAADYSFYKWTGGRKW--ALFLILTSWFWF 427
           +IL P ++ A  S  A  SFY ++ G+ W  A  ++L S+ WF
Sbjct: 189 IILTPLVIAAT-SLCAQGSFYYFSFGQSWIAAGLMVLCSFLWF 230


>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1320

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 342  VLQQTTVSINGQEVGSGLCSSFSHLGSGSILQAEHCSRLQRQLLWQ 479
            + +QT+     +   SGLC       SG  ++ EHC R +   +WQ
Sbjct: 1266 IWEQTSPQHTLRHKQSGLCLDSKEAKSGGHVRGEHCKRGEFAQIWQ 1311


>SB_51378| Best HMM Match : PAN (HMM E-Value=0.00096)
          Length = 279

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
 Frame = +2

Query: 164 EVAHKQVFHY---GELTWEWQRGIRSYLFPSVVAVLYSILKVTGLDHPEAVILLPRILQA 334
           ++A  Q  HY     L  E+Q   R   F S    L  IL+   +D  + VIL+  +L A
Sbjct: 168 KIASMQTRHYLVENGLYPEFQAAYRR--FHSTETALNDILRA--MDEKKEVILVLLVLSA 223

Query: 335 ILSTAADYSFYKWTGGRKWALFLILTSWFWFYTSGRTLLQTTETA 469
              T  D+         ++     +  WF FY +GRT     E A
Sbjct: 224 AFDTI-DHKILIDRLSSRFGFSGTVLQWFSFYINGRTQRVVIEAA 267


>SB_57881| Best HMM Match : FeoB_C (HMM E-Value=3.7)
          Length = 162

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
 Frame = +2

Query: 251 VAVLYSILKVTGLDHPEAV-----ILLPRILQAILSTAADYSFYKWTGGRKWALFLILTS 415
           VA LY   K    DHP        ++    ++   S    +  Y    G+   +  IL++
Sbjct: 23  VAPLYGTYKTVKKDHPSPFNRAENVMYGTFMRFSWSLGLAWVVYACHIGKGGLVNKILSA 82

Query: 416 WFWFYTSGRTLLQTTETALVAIALSVFPFXSGK-LGYYDKENTSWIWL-AVIAVFL 577
            FW   S  T +      LV I + +  F S + L YY   N SW +L AV A +L
Sbjct: 83  RFWIPLSRLTYM----AYLVHIIVLLVIFTSTRTLFYYSDVNISWNFLSAVSAAYL 134


>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
          Length = 556

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = +2

Query: 197 ELTWEWQRGIRSYLFPSVVAVLYSILKVTGLD----------HPEAVILLPRILQAILST 346
           +L   WQ+ + SYL   +   L+++  VTG            HP   + +P +  A  S 
Sbjct: 2   QLPKSWQQTLPSYLLEWLGKSLFTVDPVTGKQTIKPDLPMRFHPPEPLQIPTLPPANPSQ 61

Query: 347 AADYSFYKWTGGRKWALFL 403
               SF+ W   R W L L
Sbjct: 62  YFSTSFFFWAPKRTWNLAL 80


>SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = +2

Query: 197 ELTWEWQRGIRSYLFPSVVAVLYSILKVTGLD----------HPEAVILLPRILQAILST 346
           +L   WQ+ + SYL   +   L+++  VTG            HP   + +P +  A  S 
Sbjct: 219 QLPKSWQQTLPSYLLEWLGKSLFTVDPVTGKQTIKPDLPMRFHPPEPLQIPTLPPANPSQ 278

Query: 347 AADYSFYKWTGGRKWALFL 403
               SF+ W   R W L L
Sbjct: 279 YFSTSFFFWAPKRTWNLAL 297


>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 553 PYP*CVLFIIISKFSTXEWKNR*GDCHKSCLC 458
           PYP   LF + S F+  ++ NR  + H   LC
Sbjct: 628 PYPEVPLFSVYSSFTGVQYANRTNENHMKVLC 659


>SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)
          Length = 1384

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 553 PYP*CVLFIIISKFSTXEWKNR*GDCHKSCLC 458
           PYP   LF + S F+  ++ NR  + H   LC
Sbjct: 44  PYPEVPLFSVYSSFTGVQYANRTNENHMKVLC 75


>SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)
          Length = 345

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 422 WFYTSGRTLLQTTETALVAIALSVFPFXSGKLGYYDKE 535
           +F+   RT++ TT  ++  ++  +  F    +GYY++E
Sbjct: 51  YFHLQYRTMVTTTRISVAIVSFWILSFTVVTVGYYNQE 88


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 481  DCHKSCLCSLEQCSA*SIEPEPRCENEEQSP 389
            DC + C    E C     +  P+C++E+Q P
Sbjct: 1798 DCPRRCFQKCEPCKVLVAKVIPKCQHEQQIP 1828


>SB_27318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 635 SLSVSCR**ALPIEVQKLAEETQL*LLAISMMCSLYHNIQV 513
           S + SCR   LPI          L LLAI   C++YH   +
Sbjct: 120 STTWSCRATRLPIHAMGSITVLNLLLLAIERYCAIYHPFSI 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,178,004
Number of Sequences: 59808
Number of extensions: 468233
Number of successful extensions: 1218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)