Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_B01
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.83 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 502 EWKNR*GDCHKSCLCSLEQCSA*SIEPE 419
           EW+N     ++   C++  CS  ++ PE
Sbjct: 345 EWENENESDYQDAFCNIVSCSPQTVHPE 372


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 206 R*VLHSGTLVYGPLPRSASTRQEHT 132
           R VL +GTLV  P P +A  +  H+
Sbjct: 79  RRVLRNGTLVLLPFPAAAFRQDVHS 103



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 519  PSFPLLNGKTDKAIATRAVSVVWSSVLPEV 430
            P+ P +N +  +A+++  + + WS  LPE+
Sbjct: 1006 PAGPPINLEA-RALSSSEILITWSPPLPEL 1034


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 206 R*VLHSGTLVYGPLPRSASTRQEHT 132
           R VL +GTLV  P P +A  +  H+
Sbjct: 79  RRVLRNGTLVLLPFPAAAFRQDVHS 103



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 519  PSFPLLNGKTDKAIATRAVSVVWSSVLPEV 430
            P+ P +N +  +A+++  + + WS  LPE+
Sbjct: 1002 PAGPPINLEA-RALSSSEILITWSPPLPEL 1030


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 470 LVAIALSVFPFXSGKLGYYDKENTSWIWLAVIAVF 574
           LVAI++  +   +  + Y   +N   +WL ++ V+
Sbjct: 277 LVAISIDRYIAVTQPIKYAKHKNNRRVWLTILLVW 311


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 354 TTVSINGQEVGSG 392
           T +S+NG+EV SG
Sbjct: 122 TFISVNGKEVHSG 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,857
Number of Sequences: 438
Number of extensions: 4627
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)