Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_A22
(551 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 7e-39
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.4
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 1.9
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 29 2.5
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_42985| Best HMM Match : MRJP (HMM E-Value=3.9) 27 7.7
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 157 bits (380), Expect = 7e-39
Identities = 73/100 (73%), Positives = 87/100 (87%)
Frame = +1
Query: 169 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 348
P SKELRQK+NV+S+P+RKDDEVQV RGH+K QQVGKV+QVYRKK+V++I RIQREKANG
Sbjct: 33 PLSKELRQKYNVRSIPVRKDDEVQVTRGHFKSQQVGKVIQVYRKKWVIHIDRIQREKANG 92
Query: 349 ATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 468
AT VGIHPSK IVKLK++KDRK ILDR+ + +LA GK
Sbjct: 93 ATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +3
Query: 72 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 173
MK N +V+SSRRK+RK HFSAPS +RR LMS+PL
Sbjct: 1 MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPL 34
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 44 PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 220
PCRFGE N++ F + + A CSF + SP N + +PC F
Sbjct: 1239 PCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASPCSF 1298
Query: 221 AK 226
+
Sbjct: 1299 GE 1300
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 44 PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 220
PCRFGE N++ F + + A C F + SP N + +PC F
Sbjct: 1281 PCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRF 1340
Query: 221 AK 226
+
Sbjct: 1341 GE 1342
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 44 PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-ALRN*DKNSM*NPCLF 220
PCRFGE N++ F + + A C F + SP + N + +PC F
Sbjct: 1225 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASPCRF 1284
Query: 221 AK 226
+
Sbjct: 1285 GE 1286
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 44 PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 220
PCRFGE N++ F + + A C F + SP N + +PC F
Sbjct: 1309 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRF 1368
Query: 221 AK 226
+
Sbjct: 1369 GE 1370
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 44 PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 220
PCRFGE N++ F + + A C F + SP N + +PC F
Sbjct: 1337 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRF 1396
Query: 221 AK 226
+
Sbjct: 1397 GE 1398
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +2
Query: 44 PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-ALRN*DKNSM*NPCLF 220
PCRFGE N++ F + + A C F + SP N + +PC F
Sbjct: 1365 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCCFGEAPDNKIASPCRF 1424
Query: 221 A 223
+
Sbjct: 1425 S 1425
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 44 PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 220
PC FGE N++ F + + A CSF + SP N + +PC F
Sbjct: 1267 PCSFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASPCRF 1326
Query: 221 AK 226
+
Sbjct: 1327 GE 1328
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 345 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQX*IHRGNCHSHG 509
W N IC ++C C+V DE N + ++ G TW R +R + G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 519 LRGLHGCGSFLGVFTXVFAKCSQS 448
L GLH CG + VFAKC Q+
Sbjct: 72 LVGLHPCGDLVPTMLKVFAKCDQA 95
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 436 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESXQCIQQTFYD 293
C G + + ST + L+G+ CR M+L HWP F + + + +T D
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375
>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 339 LFSLNPXNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 217
L +++ ++YN+L +H+ H N L V T+ N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 47 CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTY 145
C F EER QQ G K E+ ++AF + Y
Sbjct: 2583 CPFTEERMESFQQIGRTAKSEESDKAFGFNTIY 2615
>SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1116
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 480 FTXVFAKCSQSALCSAIEDCFAVFIHLQLDNHTL-*RVNADICCCTIGL 337
FT + +KC+ L + + FA F L NH L ++ D C GL
Sbjct: 535 FTELSSKCTAEQLIVTLNELFANFDKLAAKNHCLRIKILGDCYYCISGL 583
>SB_42985| Best HMM Match : MRJP (HMM E-Value=3.9)
Length = 317
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 53 FGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPALRN 184
F EER+NE + LKK+ + + T++ + DVL A+RN
Sbjct: 26 FQEERENENDKY--LLKKQMRFNGQVEAITFRQTTDVLITAIRN 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,676
Number of Sequences: 59808
Number of extensions: 357564
Number of successful extensions: 957
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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