Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A22
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   139   1e-33
At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           130   5e-31
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    29   2.7  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   6.3  

>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  139 bits (337), Expect = 1e-33
 Identities = 65/97 (67%), Positives = 83/97 (85%)
 Frame = +1

Query: 169 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 348
           P S +LRQK+NV+SMPIRKDDEVQ+VRG YKG++ GKV+QVYR+K+V++I RI REK NG
Sbjct: 33  PLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNG 91

Query: 349 ATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAA 459
            T  VGI PSK VI KL+++KDRK++L+R+AKGR AA
Sbjct: 92  TTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAA 128



 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +3

Query: 72  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 173
           MK+N +VTSSRRKNRK HF+A S  RRV+MSSPL
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPL 34


>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  130 bits (315), Expect = 5e-31
 Identities = 61/97 (62%), Positives = 81/97 (83%)
 Frame = +1

Query: 169 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 348
           P SK+LR K NV+SMPIRKDDEVQVVRG +KG++ GKVMQVYR+K+V++I RI REK NG
Sbjct: 33  PLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGRE-GKVMQVYRRKWVIHIERITREKVNG 91

Query: 349 ATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAA 459
           +T  VG++ S  +I KL+++KDRK++L+R+A GR AA
Sbjct: 92  STVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAA 128



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 27/34 (79%), Positives = 31/34 (91%)
 Frame = +3

Query: 72  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 173
           MKFN +V+SSRRKNRK HF+APS +RRVLMSSPL
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPL 34


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 56  GEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPALRN*DKNSM 202
           GEE +  V Q  +F K    E  F+  + Y+A+  ++     N DK  +
Sbjct: 590 GEEEETHVGQIVEFFKTTDGESYFRVQWFYRATDTIMERQATNHDKRRL 638


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 97   PQEGKTGRGISVLLHI 144
            P +G TG GISVLLH+
Sbjct: 1408 PFQGSTGSGISVLLHL 1423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,321,351
Number of Sequences: 28952
Number of extensions: 237995
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)