Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A17
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    47   2e-06
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    29   0.77 
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.4  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    27   3.1  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    26   4.1  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   5.5  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
 Frame = +3

Query: 168 MADKTIPIFVPSEK--PVKLAKWKIKQGTVVTQGQVLFLYK-------------DLXGDG 302
           M+ +  PI +P+    P+++A   + QG+ V +G  L LY+             ++  D 
Sbjct: 1   MSKRLTPIHLPNSLNYPIEIASCLVPQGSYVKKGTPLLLYRFFTKVKEDQEDGSEVYVDR 60

Query: 303 EXLKKFKSSHAGTVSSIXV-KEGXVXXPSSAVAXLEE-CRHPTVMMXMCAECGADLRSEE 476
           E +++F+    G +    V KE  +   S  VA L E C H      +CA CG ++ S++
Sbjct: 61  EFVEQFECPVEGELVEWAVKKEESIENFSKIVAKLHEPCTHEVNYGGLCAICGKNITSQD 120

Query: 477 ---TXKLDVAIVPMVHSVPELKVSEQLAQKLRKEDAER 581
                 +  A + M H+  +L VS + A +L  E+ +R
Sbjct: 121 YMGYSDMARANISMTHNTGDLTVSLEEASRLESENVKR 158


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 298 SPXKSLYKNNTWPCVTTVPCF 236
           +P +SLY  N WP  TT P F
Sbjct: 443 NPDRSLYVGNVWPGFTTFPDF 463


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 312 LTXHHRPXNLCIKIILGLVLPQYLVLFSTLRVSQAFLME 196
           +T   R  + C+K++LG++ P Y  L    R    F  E
Sbjct: 400 ITKVSRAYSKCLKVLLGIIAPNYTRLLELDRELSNFFKE 438


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 122 W*FENSFGGFTFPANENKVQVQSSSWRIGVHIRPKTCCE 6
           W  ++ FG +  P   +   +   +W++G+  +PKT  E
Sbjct: 16  WRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWE 54


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 523 LN*KCLNNWHKNYVKRMLSV 582
           L+ + L+ W KNYV+RM+++
Sbjct: 300 LSTRTLSQWRKNYVERMIAL 319


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 271 NTWPCVTTVPCFI 233
           N WPC TTV C I
Sbjct: 82  NWWPCKTTVVCLI 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,477
Number of Sequences: 5004
Number of extensions: 49060
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)