Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A17
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0055 + 25235844-25235872,25237026-25237932                       28   5.6  
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970...    28   5.6  

>05_06_0055 + 25235844-25235872,25237026-25237932
          Length = 311

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 479 GLL-AAEVCSTLRAHXHHHCWMAAFF 405
           GLL AA + +TL AH HHH   AA++
Sbjct: 194 GLLNAATMPATLAAHHHHHHHAAAYY 219


>02_05_0417 -
           28796121-28796743,28796829-28796925,28797010-28797093,
           28797173-28797234,28797316-28797460,28797542-28797961,
           28798041-28798090,28798163-28798349,28798426-28798680,
           28798785-28798953,28799044-28799177,28799291-28799446,
           28799534-28799719,28799798-28799962,28800074-28800190,
           28800553-28800762,28800850-28801049,28801135-28801405,
           28801481-28801547,28801644-28801942,28802425-28802991
          Length = 1487

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 123 IRYXDFDKKRYIPFKMAD--KTIPIFVPSEKP 212
           I+Y DF  K  I F MAD  ++IP  V   KP
Sbjct: 644 IKYSDFINKELIQFSMADLLRSIPSMVDGLKP 675


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,025,397
Number of Sequences: 37544
Number of extensions: 310860
Number of successful extensions: 716
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)