Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A17
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         36   0.029
SB_57800| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21)                 31   1.1  
SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)                 28   5.8  

>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 345  SSIXVKEGXVXXPSSAVAXLEE---CRHPTVMMXMCAECGADLR 467
            S++  +E         VA +E+   C H T+M  +C +CGADLR
Sbjct: 999  SNVVFQEEYCTANPKPVAVIEQARICEHKTIMKDLCCDCGADLR 1042


>SB_57800| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21)
          Length = 298

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = -3

Query: 300 HRPXNLCIKIILGLVLPQYLVLFSTLRV 217
           HR   +CI +ILG+VLP  L+LF+ +R+
Sbjct: 146 HRVYLICI-LILGIVLPYCLILFAYVRI 172


>SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)
          Length = 440

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 152 TLFVKIXVPYW*FENSFGGFTFPANE 75
           T+F K  +  W F+ S+  FT P NE
Sbjct: 68  TIFSKGGIVLWCFQESYQSFTLPVNE 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,302
Number of Sequences: 59808
Number of extensions: 377273
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)