Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_A17
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC063447-1|AAH63447.1| 867|Homo sapiens CTD (carboxy-terminal d... 80 6e-15
AF154115-1|AAD42088.1| 961|Homo sapiens RNA polymerase II CTD p... 80 6e-15
BC052576-1|AAH52576.1| 874|Homo sapiens CTDP1 protein protein. 75 3e-13
AF081287-1|AAC64549.1| 842|Homo sapiens serine phosphatase FCP1... 46 1e-04
BC130418-1|AAI30419.1| 1153|Homo sapiens ARID4B protein protein. 31 4.7
BC121137-1|AAI21138.1| 435|Homo sapiens gap junction protein, a... 31 4.7
AY220790-1|AAO63590.1| 1312|Homo sapiens SIN3A-associated protei... 31 4.7
AL391994-2|CAI13747.1| 1310|Homo sapiens AT rich interactive dom... 31 4.7
AL391994-1|CAI13746.1| 927|Homo sapiens AT rich interactive dom... 31 4.7
AL133418-5|CAI22961.1| 1310|Homo sapiens AT rich interactive dom... 31 4.7
AL133418-1|CAI22958.1| 927|Homo sapiens AT rich interactive dom... 31 4.7
AF083249-1|AAD41239.1| 748|Homo sapiens Rb binding protein homo... 31 4.7
AF075290-1|AAD42925.1| 435|Homo sapiens gap-junction protein al... 31 4.7
AB210032-1|BAE06114.1| 1325|Homo sapiens ARID4B variant protein ... 31 4.7
AB030181-1|BAA89794.1| 803|Homo sapiens RBP1-like protein protein. 31 4.7
AB037830-1|BAA92647.2| 2461|Homo sapiens KIAA1409 protein protein. 30 6.3
>BC063447-1|AAH63447.1| 867|Homo sapiens CTD (carboxy-terminal
domain, RNA polymerase II, polypeptide A) phosphatase,
su protein.
Length = 867
Score = 80.2 bits (189), Expect = 6e-15
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 24/152 (15%)
Frame = +3
Query: 198 PSEKPVKLAKWKIKQGTVVTQGQVLFLYK-----DLXGDGEXL-------------KKFK 323
P P++L +W++ G V G VL +++ G + ++ +
Sbjct: 25 PGPAPLRLLEWRVAAGAAVRIGSVLAVFEAAASAQSAGASQSRVASGGCVRPARPERRLR 84
Query: 324 SSHAGTVSSIXVKEGXVXXPSSAVAXLEECRHPTVMMXMCAECGADL------RSEETXK 485
S AG V + + G V P + + LE C HP VM +CAECG DL ++
Sbjct: 85 SERAGVVRELCAQPGQVVAPGAVLVRLEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVP 144
Query: 486 LDVAIVPMVHSVPELKVSEQLAQKLRKEDAER 581
L A V MVHSVPEL VS + A++L +ED +R
Sbjct: 145 LSTATVSMVHSVPELMVSSEQAEQLGREDQQR 176
>AF154115-1|AAD42088.1| 961|Homo sapiens RNA polymerase II CTD
phosphatase protein.
Length = 961
Score = 80.2 bits (189), Expect = 6e-15
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 24/152 (15%)
Frame = +3
Query: 198 PSEKPVKLAKWKIKQGTVVTQGQVLFLYK-----DLXGDGEXL-------------KKFK 323
P P++L +W++ G V G VL +++ G + ++ +
Sbjct: 25 PGPAPLRLLEWRVAAGAAVRIGSVLAVFEAAASAQSAGASQSRVASGGCVRPARPERRLR 84
Query: 324 SSHAGTVSSIXVKEGXVXXPSSAVAXLEECRHPTVMMXMCAECGADL------RSEETXK 485
S AG V + + G V P + + LE C HP VM +CAECG DL ++
Sbjct: 85 SERAGVVRELCAQPGQVVAPGAVLVRLEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVP 144
Query: 486 LDVAIVPMVHSVPELKVSEQLAQKLRKEDAER 581
L A V MVHSVPEL VS + A++L +ED +R
Sbjct: 145 LSTATVSMVHSVPELMVSSEQAEQLGREDQQR 176
>BC052576-1|AAH52576.1| 874|Homo sapiens CTDP1 protein protein.
Length = 874
Score = 74.5 bits (175), Expect = 3e-13
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Frame = +3
Query: 333 AGTVSSIXVKEGXVXXPSSAVAXLEECRHPTVMMXMCAECGADL------RSEETXKLDV 494
AG V + + G V P + + LE C HP VM +CAECG DL ++ L
Sbjct: 1 AGVVRELCAQPGQVVAPGAVLVRLEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLST 60
Query: 495 AIVPMVHSVPELKVSEQLAQKLRKEDAER 581
A V MVHSVPEL VS + A++L +ED +R
Sbjct: 61 ATVSMVHSVPELMVSSEQAEQLGREDQQR 89
>AF081287-1|AAC64549.1| 842|Homo sapiens serine phosphatase FCP1a
protein.
Length = 842
Score = 46.0 bits (104), Expect = 1e-04
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Frame = +3
Query: 429 MMXMCAECGADL------RSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKEDAER 581
M +CAECG DL ++ L A V MVHSV EL VS + A++L +ED +R
Sbjct: 1 MKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVAELMVSSEQAEQLGREDQQR 57
>BC130418-1|AAI30419.1| 1153|Homo sapiens ARID4B protein protein.
Length = 1153
Score = 30.7 bits (66), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 450 CGADLRSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKE 569
CG ++R +E K D + P +VP++K +++ KL KE
Sbjct: 609 CGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKE 648
>BC121137-1|AAI21138.1| 435|Homo sapiens gap junction protein,
alpha 3, 46kDa protein.
Length = 435
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 289 KSLYKNNTWPCVTTVPCFI 233
K LY+ + WPC TV CFI
Sbjct: 176 KPLYRCDRWPCPNTVDCFI 194
>AY220790-1|AAO63590.1| 1312|Homo sapiens SIN3A-associated protein
180 protein.
Length = 1312
Score = 30.7 bits (66), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 450 CGADLRSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKE 569
CG ++R +E K D + P +VP++K +++ KL KE
Sbjct: 609 CGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKE 648
>AL391994-2|CAI13747.1| 1310|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1310
Score = 30.7 bits (66), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 450 CGADLRSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKE 569
CG ++R +E K D + P +VP++K +++ KL KE
Sbjct: 607 CGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKE 646
>AL391994-1|CAI13746.1| 927|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 927
Score = 30.7 bits (66), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 450 CGADLRSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKE 569
CG ++R +E K D + P +VP++K +++ KL KE
Sbjct: 414 CGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKE 453
>AL133418-5|CAI22961.1| 1310|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1310
Score = 30.7 bits (66), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 450 CGADLRSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKE 569
CG ++R +E K D + P +VP++K +++ KL KE
Sbjct: 607 CGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKE 646
>AL133418-1|CAI22958.1| 927|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 927
Score = 30.7 bits (66), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 450 CGADLRSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKE 569
CG ++R +E K D + P +VP++K +++ KL KE
Sbjct: 414 CGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKE 453
>AF083249-1|AAD41239.1| 748|Homo sapiens Rb binding protein homolog
protein.
Length = 748
Score = 30.7 bits (66), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 450 CGADLRSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKE 569
CG ++R +E K D + P +VP++K +++ KL KE
Sbjct: 63 CGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKE 102
>AF075290-1|AAD42925.1| 435|Homo sapiens gap-junction protein alpha
3 protein.
Length = 435
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 289 KSLYKNNTWPCVTTVPCFI 233
K LY+ + WPC TV CFI
Sbjct: 176 KPLYRCDRWPCPNTVDCFI 194
>AB210032-1|BAE06114.1| 1325|Homo sapiens ARID4B variant protein
protein.
Length = 1325
Score = 30.7 bits (66), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 450 CGADLRSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKE 569
CG ++R +E K D + P +VP++K +++ KL KE
Sbjct: 622 CGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKE 661
>AB030181-1|BAA89794.1| 803|Homo sapiens RBP1-like protein protein.
Length = 803
Score = 30.7 bits (66), Expect = 4.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 450 CGADLRSEETXKLDVAIVPMVHSVPELKVSEQLAQKLRKE 569
CG ++R +E K D + P +VP++K +++ KL KE
Sbjct: 290 CGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKE 329
>AB037830-1|BAA92647.2| 2461|Homo sapiens KIAA1409 protein protein.
Length = 2461
Score = 30.3 bits (65), Expect = 6.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 420 PTVMMXMCAECGADLRSEETXKLDVAIVPM---VHSVPEL 530
PTVM C +CGA L + L +AIV + +H P+L
Sbjct: 1827 PTVMTDKCHDCGAILEEYDEETLGLAIVVLSTFIHLSPDL 1866
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,953,515
Number of Sequences: 237096
Number of extensions: 1824351
Number of successful extensions: 3617
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3613
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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