Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A17
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.48 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 510 VHSVPELKVSEQLAQKLRKEDA 575
           +H++PE+KV+ +   K  KE+A
Sbjct: 398 IHTIPEVKVTPRFQAKRLKEEA 419


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 171 PS*TGYNAFCQNXSTLLVIRKQFWRLHFSC 82
           PS T  NA+     T+    K  WR ++SC
Sbjct: 229 PSLTSLNAYLIKNQTITCPIKVSWRGNYSC 258


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 171 PS*TGYNAFCQNXSTLLVIRKQFWRLHFSC 82
           PS T  NA+     T+    K  WR ++SC
Sbjct: 280 PSLTSLNAYLIKNQTITCPIKVSWRGNYSC 309


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 171 PS*TGYNAFCQNXSTLLVIRKQFWRLHFSC 82
           PS T  NA+     T+    K  WR ++SC
Sbjct: 229 PSLTSLNAYLIKNQTITCPIKVSWRGNYSC 258


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/78 (19%), Positives = 27/78 (34%)
 Frame = -2

Query: 424 VGWRHSSKXATAELGXXTXPSFTLIDDTVPACDDLNFFNXSPSPXKSLYKNNTWPCVTTV 245
           + W  +++    +L     P  TL+  +V    D   +  S    +      +      V
Sbjct: 550 IKWERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSARNKQGHSARRSGDVAVIV 609

Query: 244 PCFIFHFASFTGFSDGTK 191
           P  I  F    G S+G +
Sbjct: 610 PPIIEPFTFQEGLSEGMR 627


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,906
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)