Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A17
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p...    28   4.7  

>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide acetyltransferase
           (E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
           contains Pfam profiles PF00198: 2-oxo acid
           dehydrogenases acyltransferase (catalytic domain),
           PF00364: Biotin-requiring enzyme, PF02817: e3 binding
           domain; supporting cDNA
           gi|5881964|gb|AF066080.1|AF066080
          Length = 637

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
 Frame = +3

Query: 159 PFKMADKTIPIFVPSEKPVKLAKWKIKQGTVVTQGQVLFLYKDLXGDGEXLKKFKSSHAG 338
           P       +P   P+     + KW  K+G  V  G VL    ++  D +   +F+S   G
Sbjct: 82  PISQTVLAMPALSPTMSHGNVVKWMKKEGDKVEVGDVLC---EIETD-KATVEFESQEEG 137

Query: 339 TVSSIXVKEGXVXXP-SSAVAXLEECRHPTVMMXMCAECGADLRSE 473
            ++ I V EG    P +  +A + E       +    E G D + E
Sbjct: 138 FLAKILVTEGSKDIPVNEPIAIMVEEEDDIKNVPATIEGGRDGKEE 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,989,449
Number of Sequences: 28952
Number of extensions: 255343
Number of successful extensions: 550
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)