Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A14
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   100   2e-22
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.00 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   4.0  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.0  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    25   7.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.3  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  100 bits (240), Expect = 2e-22
 Identities = 48/89 (53%), Positives = 59/89 (66%)
 Frame = +2

Query: 83  HFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRA 262
           HFHKDWQR+VKTWFNQP R+ RR+Q                 +RP V+ PT+RY+ KVRA
Sbjct: 13  HFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRA 71

Query: 263 GRGFTLREIRAAGLNPVFARTIGIAVXPR 349
           GRGFTL E++AAG++   A TIGI V  R
Sbjct: 72  GRGFTLEELKAAGVSRRVASTIGIPVDHR 100



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
 Frame = +3

Query: 351 RRNKSVESLQINVQXIKEYRARLILFP-KGKKVLKGEANEQXRKLATQLRGPLMPVQQPA 527
           RRN+S ESLQ NV+ IK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A
Sbjct: 101 RRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEA 159

Query: 528 PKSVARPITEXEKNFKAYQYLRGARSIAKLVGIRA 632
            +  A+PITE  KNF A+  L   R+ A+  G RA
Sbjct: 160 VEE-AKPITEEAKNFNAFSTLSNERAYARYAGARA 193


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 283  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 164
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 450 KGEANEQXRKLATQLRGPLMPVQQPAPKSVARPITEXE 563
           + E N Q  +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 264 VEDSLFVKLGPQD*TQYLPERLELL 338
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 271 IHSS*N*GRRIEPSICPNDWNCCXSPLDATSLLNHCKSM 387
           +H S N G  ++P +  N WN     +D + +LN+ K++
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAI 59


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 370 STDLLRLAGXYSNSNRSGKYWVQSCGP 290
           S  +L LA  Y N+NR   +WV  C P
Sbjct: 26  SNKVLHLALSYLNTNRQNPHWV--CDP 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,288
Number of Sequences: 5004
Number of extensions: 48467
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)