Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_A14
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 99 3e-21
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 98 6e-21
06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445 31 0.78
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 5.5
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 28 5.5
03_02_0098 + 5608787-5610812,5610956-5611053 28 7.2
01_01_0240 + 1987731-1988403,1989998-1990248 28 7.2
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267 27 9.6
02_04_0147 + 20194244-20195717,20195953-20195969 27 9.6
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 99.1 bits (236), Expect = 3e-21
Identities = 47/90 (52%), Positives = 58/90 (64%)
Frame = +2
Query: 80 GHFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVR 259
GHF K WQ +VKTWFNQPAR+ RR+ LRPIV+C T++Y+ K R
Sbjct: 11 GHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSR 70
Query: 260 AGRGFTLREIRAAGLNPVFARTIGIAVXPR 349
AGRGFTL E++AAG+ FA TIGI+V R
Sbjct: 71 AGRGFTLEELKAAGIPKKFAPTIGISVDHR 100
Score = 70.9 bits (166), Expect = 8e-13
Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Frame = +3
Query: 351 RRNKSVESLQINVQXIKEYRARLILFP-KGKKVLKGEANEQXRKLATQLRGPLMPVQQPA 527
R+N+S+E LQ NVQ +K Y+A+L++FP + +KV G++ + ATQ++G MP+ +
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGE 160
Query: 528 PKSV-ARPITEXEKNFKAYQYLRGARSIAKLVGIR 629
+SV +T+ K FKAY LR R + +G R
Sbjct: 161 KRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIGAR 195
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 97.9 bits (233), Expect = 6e-21
Identities = 46/90 (51%), Positives = 58/90 (64%)
Frame = +2
Query: 80 GHFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVR 259
GHF K WQ +VKTWFNQPAR+ RR+ LRPIV+C T++Y+ K R
Sbjct: 11 GHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSR 70
Query: 260 AGRGFTLREIRAAGLNPVFARTIGIAVXPR 349
AGRGFTL E++AAG+ +A TIGI+V R
Sbjct: 71 AGRGFTLEELKAAGIPKKYAPTIGISVDHR 100
Score = 71.3 bits (167), Expect = 6e-13
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Frame = +3
Query: 351 RRNKSVESLQINVQXIKEYRARLILFP-KGKKVLKGEANEQXRKLATQLRGPLMPVQQPA 527
R+N+S+E LQ NVQ +K Y+A+L++FP + +KV G++ + ATQ++G MP+ +
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGE 160
Query: 528 PKSV-ARPITEXEKNFKAYQYLRGARSIAKLVGIR 629
+SV +T+ K FKAY LR R + VG R
Sbjct: 161 KRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVGAR 195
>06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445
Length = 352
Score = 31.1 bits (67), Expect = 0.78
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -1
Query: 241 PNSWASHYRT*RPSCRTWSYGLSFLYXILLSAVSSSWLVKPSFNKSLPILVEMSS*VSYY 62
P W R + +S + L LL VS S + PS+ + V + VSYY
Sbjct: 152 PTRWPDFVPGYRDTVVKYSDSMKDLAQKLLRIVSESLNLPPSYIEEAVGEVYQNITVSYY 211
Query: 61 SPCP 50
SPCP
Sbjct: 212 SPCP 215
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 126 TSQLDDTAESKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 296
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 388 TLICNDSTDLLRLAGXYSN-SNRSGKYWVQSCG 293
TLI N +T+L RL G Y N N SG ++ G
Sbjct: 167 TLIANKNTELQRLVGIYKNILNNSGVTLIEGRG 199
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 535 DLGAGC*TGINGPRSC---VASLRXCSLASPFSTFLPFGNSIR 416
D GAG G++G RSC V ++ ++A+P LP +IR
Sbjct: 79 DAGAGAGAGVDGGRSCGEVVGAVWRAAMAAPDDPELPSLGAIR 121
>01_01_0240 + 1987731-1988403,1989998-1990248
Length = 307
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 379 CNDSTDLLRLAGXYSNSNRSGKYWVQSCG 293
C+ L+R+ G YS+S +Y V+ CG
Sbjct: 161 CSGGGTLVRVGGHYSDSGSYEEYSVEGCG 189
>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
Length = 346
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 346 GXYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWA--SHYRT*RP 203
G Y + +G Y ++ GP+ T S SS + + +S A SH+R RP
Sbjct: 103 GNYYKPSLAGSYRARAPGPHATTSSSSECSSYGGFSSSEAESSHHRRLRP 152
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 220 YRT*RPSCRTWSYGLSF 170
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,623
Number of Sequences: 37544
Number of extensions: 320991
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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