Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A14
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             111   6e-25

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  111 bits (266), Expect = 6e-25
 Identities = 52/90 (57%), Positives = 61/90 (67%)
 Frame = +2

Query: 80  GHFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVR 259
           GHFHKDWQR+VKTWF+QP R+ RR+                  LRPIVRCPT +Y+TKVR
Sbjct: 12  GHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPTFKYNTKVR 71

Query: 260 AGRGFTLREIRAAGLNPVFARTIGIAVXPR 349
           AGRGFTL E++AAG+    A TIGIAV  R
Sbjct: 72  AGRGFTLDELKAAGIPRKVAPTIGIAVDHR 101



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +3

Query: 351 RRNKSVESLQINVQXIKEYRARLILFP-KGKKVLKGEANEQXRKLATQLRGPLMPVQQPA 527
           R+N+S ESLQ NVQ +KEY+++LI+FP K  K  +G++       A QL+GP+MP+ Q +
Sbjct: 102 RKNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQES 161

Query: 528 PKSVARPITEXEKNFKAYQYLRGARSI-AKLVGIRAN 635
               ARPITE EK   + +    +  +  KLVG+  N
Sbjct: 162 VPIKARPITEDEKKSASSRQCESSGEVKTKLVGLGVN 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,713,113
Number of Sequences: 59808
Number of extensions: 365379
Number of successful extensions: 860
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)