Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_A14
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 100 2e-21
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 82 4e-16
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 31 0.53
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 31 0.53
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical pr... 27 8.6
U97196-13|AAK68666.1| 430|Caenorhabditis elegans Altered averme... 27 8.6
U41113-1|AAC25482.1| 430|Caenorhabditis elegans inhibitory amin... 27 8.6
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 99.5 bits (237), Expect = 2e-21
Identities = 46/93 (49%), Positives = 60/93 (64%)
Frame = +2
Query: 83 HFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRA 262
HF K W + +KTWF+QPAR+ RR+QN LR +VRCP RY+TK R
Sbjct: 13 HFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRL 72
Query: 263 GRGFTLREIRAAGLNPVFARTIGIAVXPR*TQQ 361
GRGF+L+E++AAG++ ARTIGIAV R T +
Sbjct: 73 GRGFSLQELKAAGISQAQARTIGIAVDVRRTNK 105
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = +3
Query: 351 RRNKSVESLQINVQXIKEYRARLILFP-KGKKVLKGEANEQXRKLATQLRGPLMPVQQPA 527
R NK+ E L+ N +KEY+A+LILFP K KG+++ + K+A QLRG ++P+
Sbjct: 102 RTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTI 161
Query: 528 PKSVARPITEXEKNFKAYQYLRGARSIAKLVGIR 629
R +T+ E+ + ++ LR R+ K G R
Sbjct: 162 TFDEPRQVTDAERKVEIFRLLRKERADKKYRGKR 195
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = +2
Query: 83 HFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRA 262
HF K W + +KTWF+QPAR+ RR+QN LR +VRCP RY+TK R
Sbjct: 13 HFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRL 72
Query: 263 GRGFTLREIRAAGLN 307
GRGF+L+E++AA N
Sbjct: 73 GRGFSLQELKAAEEN 87
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 420 ILFPKGKKVLKGEANEQXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNFK 575
++F K VLK Q + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 420 ILFPKGKKVLKGEANEQXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNFK 575
++F K VLK Q + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 420 ILFPKGKKVLKGEANEQXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNFK 575
++F K VLK Q + A +GPL+P Q AP +V IT+ +N K
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951
>Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical
protein ZK1010.8 protein.
Length = 388
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -2
Query: 192 RGAT-ALAFF-IXFCFLRYRRAGWLNQVLTNL 103
RGAT A+A + I +CF+++ GW QV+ N+
Sbjct: 9 RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40
>U97196-13|AAK68666.1| 430|Caenorhabditis elegans Altered
avermectin sensitivityprotein 14, isoform b protein.
Length = 430
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 111 LKLGLTSQLDDTAESKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPV 266
+ LG+T+ L T ++ KL P ++ + ++ C A +FG +L+YA V
Sbjct: 286 VSLGVTTLLTMTTQASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVV 337
>U41113-1|AAC25482.1| 430|Caenorhabditis elegans inhibitory amino
acid receptorsubunit gbr-2B protein.
Length = 430
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 111 LKLGLTSQLDDTAESKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPV 266
+ LG+T+ L T ++ KL P ++ + ++ C A +FG +L+YA V
Sbjct: 286 VSLGVTTLLTMTTQASGINTKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVV 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,758,423
Number of Sequences: 27780
Number of extensions: 269053
Number of successful extensions: 575
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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