Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A14
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.27 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 159 FCFLRYRRAGWLNQVLTNLCQSLWKCPVR 73
           FC+ R   A W N V  NL  SL KC +R
Sbjct: 538 FCYFRRNAATWKNAVRHNL--SLHKCFMR 564


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 184 SSTSCSWAVTSY 219
           S + C+W +TSY
Sbjct: 66  SGSKCTWTITSY 77


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 258 APVEDSLFVKLGPQD*TQYLPERLELLXIPARRNKS 365
           A  EDS  +++G      Y+    +++ +PA RN++
Sbjct: 179 AQTEDSNQIEVGIDLTDYYISVEWDIIKVPAVRNEA 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,529
Number of Sequences: 438
Number of extensions: 3734
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)