Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A14
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    91   4e-19
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    91   4e-19
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            89   2e-18
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    81   6e-16
At5g47070.1 68418.m05800 protein kinase, putative similar to pro...    33   0.16 
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil...    32   0.37 
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    29   2.0  
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro...    28   4.6  
At5g12280.1 68418.m01444 hypothetical protein                          27   8.0  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 44/90 (48%), Positives = 55/90 (61%)
 Frame = +2

Query: 80  GHFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVR 259
           GHF K WQ +VKTWFNQPAR+ RR+                  LRP+V   T++Y+ KVR
Sbjct: 10  GHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVR 69

Query: 260 AGRGFTLREIRAAGLNPVFARTIGIAVXPR 349
            G+GFTL E++AAG+    A TIGIAV  R
Sbjct: 70  TGKGFTLEELKAAGIPKKLAPTIGIAVDHR 99



 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
 Frame = +3

Query: 351 RRNKSVESLQINVQXIKEYRARLILFP-KGKKVLKGEANEQXRKLATQLRGPLMPVQQPA 527
           R+N+S+E LQ NVQ +K Y+ +L++FP + +KV  G++  +    ATQ++G  +P+ +  
Sbjct: 100 RKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREK 159

Query: 528 PKSVARPITEXEKNFKAYQYLRGARSIAKLVGIRA 632
           P      +T   K+FKA+  +R  R+  +  G RA
Sbjct: 160 PTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARA 194


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 44/90 (48%), Positives = 55/90 (61%)
 Frame = +2

Query: 80  GHFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVR 259
           GHF K WQ +VKTWFNQPAR+ RR+                  LRP+V   T++Y+ KVR
Sbjct: 10  GHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVR 69

Query: 260 AGRGFTLREIRAAGLNPVFARTIGIAVXPR 349
            G+GFTL E++AAG+    A TIGIAV  R
Sbjct: 70  TGKGFTLEELKAAGIPKKLAPTIGIAVDHR 99



 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
 Frame = +3

Query: 351 RRNKSVESLQINVQXIKEYRARLILFP-KGKKVLKGEANEQXRKLATQLRGPLMPVQQPA 527
           R+N+S+E LQ NVQ +K Y+ +L++FP + +KV  G++  +    ATQ++G  +P+ +  
Sbjct: 100 RKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREK 159

Query: 528 PKSVARPITEXEKNFKAYQYLRGARSIAKLVGIRA 632
           P      +T   K+FKA+  +R  R+  +  G RA
Sbjct: 160 PTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARA 194


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 42/91 (46%), Positives = 55/91 (60%)
 Frame = +2

Query: 77  TGHFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 256
           + HF K WQ +VKTWFNQPAR+ RR+                  LRP+V   T++Y+ KV
Sbjct: 9   SSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKV 68

Query: 257 RAGRGFTLREIRAAGLNPVFARTIGIAVXPR 349
           RAG+GFTL E++ AG+    A TIGI+V  R
Sbjct: 69  RAGKGFTLEELKVAGIPKKLAPTIGISVDHR 99



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
 Frame = +3

Query: 351 RRNKSVESLQINVQXIKEYRARLILFP-KGKKVLKGEANEQXRKLATQLRGPLMPVQQPA 527
           R+N+S+E LQ NVQ +K Y+A+L++FP + ++V  G++  +    ATQ++G  MP+    
Sbjct: 100 RKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVK 159

Query: 528 PKSVARPITEXEKNFKAYQYLRGARSIAKLVGIRA 632
                  +T   K FKAY  +R  R+ A+  G RA
Sbjct: 160 AAMELVKLTADLKAFKAYDKIRLERTNARHAGARA 194


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 39/87 (44%), Positives = 52/87 (59%)
 Frame = +2

Query: 80  GHFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVR 259
           GHF K W+ +VKT FNQPA + RR+                  +RP+V   T+ Y+ KVR
Sbjct: 10  GHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVR 69

Query: 260 AGRGFTLREIRAAGLNPVFARTIGIAV 340
           AG+GFTL E++AAG+    A TIGI+V
Sbjct: 70  AGKGFTLEELKAAGIPKKLAPTIGISV 96



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
 Frame = +3

Query: 351 RRNKSVESLQINVQXIKEYRARLILFPKGKKVLK-GEANEQXRKLATQLRGPLMPVQQPA 527
           R+N+S+E  Q NVQ +K Y+A+L++FP+  + +K G++ +Q    ATQ++   MP+ +  
Sbjct: 100 RKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREM 159

Query: 528 PKSVARPITEXEKNFKAYQYLRGARSIAKLVGIRA 632
           P      +T   K F AY  +R      +  G+RA
Sbjct: 160 PTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRA 194


>At5g47070.1 68418.m05800 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 410

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 432 KGKKVLKGEANEQXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNFKAYQY 587
           KGK++L+  A E   +  T       P   P+P+S+    TE E+N + + Y
Sbjct: 25  KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76


>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
           protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
           6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
           stearothermophilus}; contains Pfam profiles PF00579:
           tRNA synthetases class I (W and Y), PF01479: S4 domain
          Length = 511

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 324 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 190
           +R   GF+P A      N L    L W++  GH+ +G  G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 186 ATALAFFIXFCFLRYRRAGWLNQV 115
           A  L FFI FCF  YR +G+L  V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289


>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
           protein similar to oligopeptide transporter Opt1p
           [Candida albicans] GI:2367386; contains Pfam profile
           PF03169: OPT oligopeptide transporter protein
          Length = 766

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -2

Query: 156 CFLRYRRAGWLNQVLTNLC----QSLWKCP 79
           CF+    A WL + + N+C     S+W CP
Sbjct: 572 CFVYLTTAWWLMETIPNICDSVTNSVWTCP 601


>At5g12280.1 68418.m01444 hypothetical protein
          Length = 419

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 363 SVESLQINVQXIKEYRARLILFPKGKKVLKGEA 461
           +V+SL  NV  +KE  +  I FP  K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,733
Number of Sequences: 28952
Number of extensions: 255281
Number of successful extensions: 588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)