Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A12
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67755-9|CAM33504.2|  224|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ...    27   7.9  

>Z67755-9|CAM33504.2|  224|Caenorhabditis elegans Hypothetical
           protein F54F7.9 protein.
          Length = 224

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 510 ELILFKIFSVSXFNIV*KIYKEYFQC-SFKVSKATLNCPLCYQ 385
           E+ + K F  + F I  K+Y+E F+C + + S  T N   CY+
Sbjct: 96  EVKVLKYFHDAVFYIGNKVYREGFECMTLEFSSITTNAQKCYE 138


>Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical
           protein C49F5.4 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 191 VKVRKCASTCKCYE---YLLACADVVFLKCYFILCVLTIYVL 307
           V ++KC    +C+E   Y+  C    F KC ++   L  Y+L
Sbjct: 40  VPIKKCFRGERCFEKTPYIFKCTSCRFQKCLYVGMTLPSYLL 81


>AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ion
           channel protein 12 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 227 YEYLLACADVVFLKCYFIL-CVLTIYV 304
           ++   +CAD++   C+F + C++T Y+
Sbjct: 394 WQRFFSCADIICGSCFFFVNCIITFYM 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,938,524
Number of Sequences: 27780
Number of extensions: 151892
Number of successful extensions: 266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)