Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A11
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   2.8  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   6.5  
SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.5  

>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 19  SSYLNLIHGQSASLKSTCKINANVPTLFQVFD 114
           S  L L+      L+  CKI     TL QVFD
Sbjct: 34  SKRLKLLEDLKGKLEVECKIRDGAETLLQVFD 65


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 542 PRASHSSTMPSPVCDPLLLHNP 607
           P  SH+ T  SPV D ++  NP
Sbjct: 266 PHYSHAETRKSPVVDGIVRRNP 287


>SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -2

Query: 161 LHWTHDLLYIRSDFIGSNTWK---RVGTLAF 78
           LH  H + ++ +D +GS TW+   + G L+F
Sbjct: 55  LHAGHTVKFVSADRLGSTTWECNIKFGILSF 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,985
Number of Sequences: 5004
Number of extensions: 32961
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)