Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A11
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0177 - 1312229-1312498,1314758-1315630,1315729-1315885,131...    33   0.18 
11_01_0176 - 1403284-1403553,1404313-1404468,1404569-1404787,140...    31   0.71 
03_05_1117 - 30526126-30526640,30527114-30527186,30527310-305278...    31   0.94 

>12_01_0177 -
           1312229-1312498,1314758-1315630,1315729-1315885,
           1316207-1316247
          Length = 446

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -1

Query: 438 DVTLTIITXAHCNDVCINTLRIYNATRL*NXFHG----LPHNKMKYVRVNFK 295
           D +L ++T   C+++  +T+R+++   L N   G    LPH +  YV VN K
Sbjct: 304 DGSLALVTLNECSNIKASTIRLFDEKTLQNILTGIPSVLPHVETLYVEVNVK 355


>11_01_0176 -
           1403284-1403553,1404313-1404468,1404569-1404787,
           1405198-1405440,1405539-1405695,1406186-1406226
          Length = 361

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -1

Query: 438 DVTLTIITXAHCNDVCINTLRIYNATRL*NXFHG----LPHNKMKYVRVNFK 295
           D +L ++T   C+++  +T+R+++   L N   G    LPH +  YV V+ K
Sbjct: 167 DGSLALVTLNECSNIKASTIRLFDEKTLQNILTGIPSVLPHVETLYVEVHVK 218


>03_05_1117 -
           30526126-30526640,30527114-30527186,30527310-30527848,
           30528215-30528332
          Length = 414

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 145 SCVQCSIYXHPIKICGYIWTLSVML*TXMI*TIGFVVVREVLQCC 279
           S ++C       KICG+I  L   L T M  T+G  +  ++  CC
Sbjct: 114 SYIKCEAVLEENKICGHIGHLDCALRTFMAGTVGGCIDLDMQYCC 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,250,992
Number of Sequences: 37544
Number of extensions: 186607
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)