Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A11
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          27   9.0  

>SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 129 VRFYRIKHLEESRYIGIYFTCRF 61
           +RF R+ H + SR +GI  TCR+
Sbjct: 7   LRFQRVAHQQFSRTLGIQTTCRY 29


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 267  FTVLLSGFKF*NLLEHISFYCVVTHEXYFIV*LHCKF 377
            F+++   F F +++ H  F+ ++TH  +F++  H  F
Sbjct: 1011 FSIITHHFFF-SIITHHYFFSIITHHYFFVIITHHYF 1046


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,878,177
Number of Sequences: 59808
Number of extensions: 244323
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)